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About INSACOG

The Indian SARS-CoV-2 Genomics Consortium (INSACOG), a consortium of 58 Laboratories is a Pan-India network to monitor genomic variations in the SARS-CoV-2 by a sentinel sequencing effort. The network carries out whole genome sequencing of SARS-CoV-2 virus across the nation, aiding the understanding of how the virus spreads and evolves, and provide information to aid public health response. It is jointly initiated by the Union Health Ministry of Health, and Department of Biotechnology (DBT) with Council for Scientific & Industrial Research (CSIR) and Indian Council of Medical Research (ICMR).

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Statewise SARS-CoV-2 Sequences

Recent Data Uploaded

Total SARS-CoV-2 Uploaded Genome Sequences: 1188

#	Center Name	Sample	Date	Sample Type
1	National Institute of Biomedical Genomics, Kalyani	5	2024-06-28	FASTQ
2	National Institute of Biomedical Genomics, Kalyani	42	2024-06-27	FASTQ
3	National Institute of Biomedical Genomics, Kalyani	25	2024-06-03	FASTQ
4	Institute of Life Sciences,Bhubaneswar	41	2024-05-21	FASTQ
5	VNSGU, Gujarat	21	2024-05-20	FASTQ
6	Dr G M Taori Central India Institute of Medical Sciences , Nagpur	24	2024-05-13	FASTQ
7	National Institute of Biomedical Genomics, Kalyani	15	2024-04-10	FASTQ
8	Institute of Life Sciences,Bhubaneswar	64	2024-03-22	FASTQ
9	National Institute of Biomedical Genomics, Kalyani	55	2024-03-19	FASTQ
10	Dr G M Taori Central India Institute of Medical Sciences , Nagpur	2	2024-03-13	FASTQ
11	Dr G M Taori Central India Institute of Medical Sciences , Nagpur	14	2024-03-12	FASTQ
12	Dr G M Taori Central India Institute of Medical Sciences , Nagpur	40	2024-03-09	FASTQ
13	National Institute of Biomedical Genomics, Kalyani	15	2024-03-07	FASTQ
14	Gujarat Biotechnology Research Centre, Gandhinagar	103	2024-02-02	FASTQ
15	VNSGU, Gujarat	55	2024-02-02	FASTQ
16	Translational Health Science and Technology Institute, Faridabad	27	2024-02-01	FASTQ
17	National Institute of Biomedical Genomics, Kalyani	20	2024-01-31	FASTQ
18	CSIR Indian Institute Of Chemical Technology, Secunderabad	17	2024-01-30	FASTQ
19	Gujarat Biotechnology Research Centre, Gandhinagar	82	2024-01-24	FASTQ
20	Institute of Life Sciences,Bhubaneswar	60	2024-01-10	FASTQ
21	National Institute of Biomedical Genomics, Kalyani	152	2023-12-31	FASTQ
22	Institute of Life Sciences,Bhubaneswar	25	2023-12-29	FASTQ
23	National Institute of Biomedical Genomics, Kalyani	60	2023-10-17	FASTQ
24	National Institute of Biomedical Genomics, Kalyani	58	2023-10-16	FASTQ
25	Institute of Life Sciences,Bhubaneswar	66	2023-10-11	FASTQ
26	Institute of Life Sciences,Bhubaneswar	53	2023-08-28	FASTQ
27	Institute of Life Sciences,Bhubaneswar	45	2023-06-22	FASTQ
28	Institute of Life Sciences,Bhubaneswar	2	2023-05-24	FASTQ

Variant Group Distribution (Pangolin: v4.2)

Variant Group Classification

Lineage Group	Lineage Name
Alpha	B.1.1.7, Q.4, Q.8, Q.6
BA.1	BA.1
BA.1.X	BA.1.1, BA.1.10, BA.1.1.1, BA.1.1.10, BA.1.1.11, BA.1.1.13, BA.1.1.14, BA.1.1.15, BA.1.1.16, BA.1.1.18, BA.1.1.2, BA.1.13, BA.1.13.1, BA.1.14, BA.1.1.4, BA.1.15, BA.1.15.1, BA.1.16, BA.1.17, BA.1.1.7, BA.1.17.1, BA.1.17.2, BA.1.18, BA.1.1.8, BA.1.19, BA.1.1.9, BA.1.20, BA.1.21, BA.1.21.1, BA.1.6, BA.1.7, BA.1.8, BA.1.9, BA.1.1.12, BA.1.14.1, BA.1.15.3, BA.1.5, BD.1, B.1.1.164, B.1.1.166, B.1.1.28, BA.1.14.2
BA.2	BA.2
BA.2.10	BA.2.10, BA.2.10.1, BA.2.10.2, BA.2.10.3, BA.2.10.4, BJ.1
BA.2.12	BA.2.12, BA.2.12.1, BA.2.12.2, BG.2
BA.2.38	BA.2.38, BA.2.38.1, BA.2.38.2, BH.1, BA.2.38.3
BA.2.75	BA.2.75, BA.2.75.2, BA.2.75.1, BM.4, BL.1.1, BA.2.75.5, BN.1, BM.1.1.1, BL.4, BA.2.75.6, BN.2, BL.3, BR.3, BM.5, BA.2.75.9, BL.2, BM.2, BL.1.3, BQ.1, BM.1, CA.2, BA.2.75.7, BA.2.75.4, BL.1, BY.1, BM.4.1, BR.1, BA.2.75.3, BM.4.1.1, CB.1, BM.1.1, BN.2.1, BL.1.2, XBD, CA.4, CA.3, BM.2.1, BQ.1.1, BM.1.1.3, BY.1.1, BN.1.2, CH.1.1, BN.5, BN.6, BM.2.3, BN.3, BN.1.4, BN.1.1, CH.2, BA.2.75.10
BA.2.X	BA.2.1, BA.2.11, BA.2.16, BA.2.17, BA.2.18, BA.2.20, BA.2.23, BA.2.26, BA.2.27, BA.2.29, BA.2.3, BA.2.31, BA.2.32, BA.2.3.2, BA.2.33, BA.2.3.3, BA.2.4, BA.2.5, BA.2.7, BA.2.9, BA.2.2 , BA.2.2, BA.2.25.1, BA.2.3.1, BA.2.34, BA.2.35, BA.2.36, BA.2.37, BA.2.40.1, BA.2.6, BA.2.8, BA.2.24, BA.2.28, BA.2.13, BA.2.15, BA.2.23.1, BA.2.3.15, BA.2.3.16, BA.2.41, BA.2.43, BA.2.44, BA.2.50, BA.2.55, BA.2.56, BA.2.57, BA.2.58, BA.2.61, BA.2.65, BA.2.66, BA.2.67, BA.2.68, BA.2.70, BA.2.72, BA.2.73, BA.2.3.13, BA.2.19, BA.2.30, BA.2.3.14, BA.2.42, BA.2.45, BA.2.74, BA.2.76, BA.2.78, BA.2.79, BA.2.79.1, BA.2.3.9, BA.2.40, BG.3, BA.2.64, BA.2.9.3, BA.2.62, BA.2.52, BA.2.49, BA.2.76.1, BA.2.31.1, BA.2.9.5, BA.2.83, BA.2.63, BA.2.82, BA.2.71, BA.2.3.20, BA.2.13.1, CM.2
BA.3	BA.3
BA.4	BA.4, BA.4.1, BA.4.1.1, BA.4.2, BA.4.4, BA.4.6, BA.4.1.8, BA.4.7, BA.4.1.5, BA.4.8, BA.4.1.9, BA.4.6.1, BA.4.1.6, BA.4.6.3
BA.5	BA.5, BA.5.2.1, BA.5.2, BA.5.1, BA.5.3.1, BA.5.5, BE.1, BF.1, BA.5.1.3, BE.1.1, BE.3, BF.2, BF.3, BF.4, BA.5.1.4, BA.5.1.2, BA.5.3, BA.5.6, BA.5.2.3, BA.5.1.1, BF.5, BA.5.3.3, BA.5.2.4, BF.10, BF.3.1, BF.8, BA.5.2.2, BA.5.1.10, BF.12, BF.7, BA.5.8, BA.5.2.26, BA.5.2.6, BA.5.2.21, BA.5.1.24, BF.23, BA.5.1.12, BA.5.1.25, BF.27, BA.5.2.27, BF.21, BF.24, BA.5.2.28, BA.5.1.17, BA.5.2.8, BF.20, BE.4.1, BA.5.1.23, BF.26, BA.5.1.22, BA.5.2.31, BF.15, CE.1, BA.5.2.30, BA.5.2.22, BA.5.2.33, BA.5.2.18, BF.28, BA.5.2.19, BA.5.2.16, BA.5.2.24, BA.5.2.9, BE.1.1.2, BF.18, BA.5.2.20, BE.4, BF.6, BA.5.9
Beta	B.1.351, B.1.351.2, B.1.351.3
Delta	AY.1, AY.113, AY.122, B.1.617.2, AY.100, AY.101, AY.102, AY.103, AY.104, AY.105, AY.106, AY.107, AY.108, AY.109, AY.110, AY.111, AY.112, AY.112.2, AY.116, AY.117, AY.118, AY.119, AY.119.2, AY.120, AY.120.2, AY.121.1, AY.122.1, AY.122.6, AY.124, AY.124.1.1, AY.125, AY.126, AY.127, AY.127.1, AY.128, AY.129, AY.131, AY.15, AY.16, AY.20, AY.21, AY.23, AY.23.1, AY.24, AY.25, AY.25.1, AY.27, AY.28, AY.29.1, AY.3, AY.30, AY.32, AY.33, AY.34, AY.34.1, AY.36, AY.37, AY.38, AY.39, AY.39.1, AY.39.1.1, AY.39.1.4, AY.39.3, AY.4, AY.4.13, AY.42, AY.4.2, AY.4.2.1, AY.4.2.2, AY.4.2.3, AY.43, AY.4.3, AY.43.7, AY.44, AY.45, AY.4.5, AY.46, AY.46.2, AY.46.3, AY.46.4, AY.46.5, AY.46.6, AY.47, AY.48, AY.4.8, AY.5, AY.52, AY.53, AY.54, AY.5.4, AY.55, AY.57, AY.58, AY.59, AY.6, AY.61, AY.65, AY.71, AY.75, AY.76, AY.77, AY.79, AY.8, AY.80, AY.82, AY.83, AY.84, AY.85, AY.86, AY.88, AY.9, AY.91, AY.92, AY.93, AY.94, AY.95, AY.98, AY.98.1, AY.99, AY.99.1, AY.120.1, AY.121, AY.29, AY.39.1.2, AY.4.7, AY.4.9, AY.5.3, AY.33.2, AY.35, AY.70
Epsilon	B.1.429
Eta	B.1.525
Gamma	P.1, P.1.1
Iota	B.1.526
JN.1	JN.1.1.6, JN.1.1.7, JN.1.16.1, JN.1.18.1, JN.1.28, JN.1.28.1, JN.1.29, JN.1.30, JN.1.30.1, JN.1.32, JN.1.33, JN.1.37, JN.1.38, JN.1.39, JN.1.4.4, JN.1.4.5, JN.1.4.7, JN.1.40, JN.1.43.1, JN.1.44, JN.1.47, JN.1.48, JN.1.48.1, JN.1.8.3, JN.1.9.2, KP.1.1.1, KP.1.2, KP.2.1, KP.2.2, KP.2.3, KP.3, KP.4, KP.4.1, KP.4.2, KU.1, KU.2, KZ.1, KZ.1.1, LB.1, LC.1
Kappa	B.1.617.1
Omicron	B.1.1.529, XAB, XAH, XE, XN, XAG, XAP, XAS, XAQ
Other	A, A.1, A.19, A.2, A.23.1, A.27, A.29, AE.3, AE.4, B, B.1, B.11, B.1.1, B.1.1.10, B.1.1.101, B.1.111, B.1.1.112, B.1.1.117, B.1.113, B.1.1.132, B.1.116, B.1.1.161, B.1.1.168, B.1.1.174, B.1.1.189, B.1.1.201, B.1.1.214, B.1.1.216, B.1.1.220, B.1.1.222, B.1.1.25, B.1.1.27, B.1.1.273, B.1.1.274, B.1.1.282, B.1.1.285, B.1.1.306, B.1.1.312, B.1.1.317, B.1.1.318, B.1.1.326, B.1.1.339, B.1.1.353, B.1.1.354, B.1.1.357, B.1.1.359, B.1.1.368, B.1.137, B.1.1.397, B.1.1.416, B.1.1.420, B.1.143, B.1.1.441, B.1.145, B.1.1.45, B.1.1.46, B.1.1.487, B.1.1.523, B.1.1.525, B.1.1.526, B.1.153, B.1.1.53, B.1.1.54, B.1.1.57, B.1.1.63, B.1.170, B.1.177, B.1.177.16, B.1.177.19, B.1.177.4, B.1.177.7, B.1.177.87, B.1.179, B.1.1.8, B.1.182, B.1.184, B.1.192, B.1.195, B.1.2, B.1.201, B.1.206, B.1.210, B.1.214.3, B.1.222, B.1.234, B.1.238, B.1.239, B.1.241, B.1.243, B.1.247, B.1.250, B.1.258, B.1.258.20, B.1.260, B.1.36, B.1.36.10, B.1.36.16, B.1.36.18, B.1.36.19, B.1.36.22, B.1.36.24, B.1.36.29, B.1.36.31, B.1.36.35, B.1.36.38, B.1.36.39, B.1.36.7, B.1.36.8, B.1.369, B.1.378, B.1.380, B.1.384, B.1.390, B.1.397, B.1.398, B.1.399, B.1.401, B.1.428, B.1.436, B.1.441, B.1.459, B.1.465, B.1.466.1, B.1.466.2, B.1.470, B.1.473, B.1.523, B.1.524, B.1.533, B.1.537, B.1.538, B.1.540, B.1.548, B.1.551, B.1.558, B.1.560, B.1.578, B.1.602, B.1.609, B.1.617, B.1.617.3, B.1.618, B.1.620, B.1.633, B.1.640.2, B.1.78, B.1.81, B.1.91, B.23, B.26, B.3, B.4, B.40, B.4.7, B.6, B.6.1, B.6.6, C.17, C.36, C.36.3, C.38, L.3, R.1, XM, XU, B.1.1.172, B.1.118, B.1.1.462, B.1.1.1, B.1.1.261, B.1.159, B.1.36.17, B.1.1.83, B.1.199, XC, B.55, B.1.22, B.1.240, B.1.1.33
XBB	XBB, XBB.1, XBB.2, XBB.3, XBB.4, FY.3
Zeta	P.2

S.No	Institute Name	Short Name
1	All India Institute of Medical Sciences, Bhopal	AIIMSB
2	All India Institute of Medical Sciences, Jodhpur	AIIMSJ
3	All India Institute of Medical Sciences, New Delhi	AIIMSND
4	All India Institute of Medical Sciences, Raipur	AIIMSR
5	Bangalore Medical College and Research Institute, Bengaluru	BMCRI
6	Byramjee Jeejeebhoy Government Medical College,Pune	BJGMC
7	CSIR-National Environmental Engineering Research Institute, Nagpur	NEERI
8	Central Drug Research Institute, Lucknow	CDRI
9	Centre for Brain Research - Indian Institute of Science, Bengaluru	CBRIISc
10	Centre for Cellular and Molecular Biology, Hyderabad	CCMB
11	Centre for DNA Fingerprinting and Diagnostics, Hyderabad	CDFD
12	Defence Research & Development Establishment, Gwalior	DRDE
13	Dr. Sampurnanand Medical College (SNMC), Jodhpur	SNMC
14	Gandhi Medical College, Secunderabad	GMCH
15	Government Doon Medical College, Dehradun	GDMC
16	Government Medical College, Patiala	GMCPTA
17	Gujarat Biotechnology Research Centre,Gandhinagar	GBRC
18	ICMR - National Institute of Virology, Pune	ICMR-NIV
19	ICMR - Regional Medical Research Centre, Dibrugarh	RMRCDBRG
20	ICMR-National Institute for Research in Tuberculosis, Chennai	ICMR-NIRT

S.No	Institute Name	Short Name
21	Indian Institute of Chemical Biology, Kolkata	IICB
22	Indian Institute of Science Education and Research, Pune	IISER
23	Indira Gandhi Institute of Medical Sciences, Patna	IGIMS
24	Institute for Stem Cell Science and Regenerative Medicine, Bengaluru	InSTEM
25	Institute of Bioresources and Sustainable Development, Imphal	IBSD
26	Institute of Genomics and Integrative Biology, New Delhi	IGIB
27	Institute of Life Sciences, Bhubaneswar	ILS
28	Institute of Liver and Biliary Sciences, New Delhi	ILBS
29	Institute of Microbial Technology, Chandigarh	IMTECH
30	Jawaharlal Nehru Centre for Advanced Scientific Research, Bengaluru	JNCASR
31	Kasturba Hospital for Infectious Diseases, Mumbai	KHID
32	Kempegowda Institute of Medical Sciences, Bengaluru	KIMS
33	King George's Medical College, Lucknow	KGMU
34	Maharshi Dayanand University , Rohtak	MDU
35	Multidisciplinary Research Unit (MRU), IMS, BHU, Varanasi	MRUIMS
36	Mysore Medical College & Research Institute, Mysruru	MMCRI
37	National Botanical Research Institute, Lucknow	NBRI
38	National Centre for Cell Science, Pune	NCCS
39	National Centre for Disease Control, New Delhi	NCDC
40	National Chemical Laboratory, Pune	NCL

S.No	Institute Name	Short Name
41	National Institute of Biomedical Genomics, Kalyani	NIBMG
42	National Institute of Immunology, New Delhi	NII
43	National Institute of Mental Health and Neuro Sciences Hospital, Bengaluru	NIMHANS
44	North East Institute of Science and Technology, Jorhat	NEIST
45	Pasteur Institute, Shillong	PI
46	Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram	RGCB
47	Sawai Man Singh Medical College, Jaipur	SMSMC
48	Shri Vinoba Bhave College & NAMO medical Education & Research Institute, Silvassa	NAMO-MERI-SVBCH
49	Siddhartha Medical College - INSACOG, Vijayawada	SMCV
50	Sri Aurobindo Institute of Medical Sciences & Post Graduate Institute, Indore	SAIMSPGI
51	State Public Health Laboratory, Chennai	SPHLMAS
52	Translational Health Science and Technology Institute, Faridabad	THSTI