| 1 |
INRP000009
|
DNA methylation |
Whole Genome Bisulfite sequencing of rice |
|
|
2021-06-23 |
PRJEB45886
|
|
| 2 |
INRP000010
|
Characterization of novel regulators for heat stress tolerance in tomato from Indian sub-continent |
transcriptome of tomato |
|
|
2021-06-30 |
PRJEB45906
|
|
| 3 |
INRP000011
|
Drought resonsive miRNome of rice |
Charaterization of drought resonsive miRNome in flag leaf of rice. |
|
|
2021-06-14 |
PRJEB45633
|
|
| 4 |
INRP000017
|
Investigations on regulation of miRNAs in rice reveal [Ca2+]cyt signal transduction regulated miRNAs |
Cytosolic calcium mediated regulation of miRNAs in rice cultivar N22. |
|
|
2021-09-28 |
PRJEB47136
|
|
| 5 |
INRP000020
|
Variety-specific transcript accumulation during reproductive stage drought stress in rice |
RNA-Seq analysis of rice varieties Nagina22 and IR64 in adult tissues of Flag leaf, inflorescence and root under control and field drought conditions. |
|
|
2021-10-15 |
PRJEB47431
|
|
| 6 |
INRP000029
|
Genomic Surveillance for SARS CoV 2 In India Indian SARS CoV 2 Genomics Consortium INSACOGG |
The proposed genomic surveillance for SARS CoV 2 In India is aimed at sustained detection of mutations in the viral genome from samples from all regions in India |
|
|
2022-06-11 |
PRJEB53470
|
|
| 7 |
INRP000031
|
Genome sequencing and assembly of Brassica Carinata accession HC20 |
Brassica Carinata accession HC20 genome sequencing |
|
|
2023-08-24 |
PRJEB55587
|
|
| 8 |
INRP000032
|
Transcriptome analysis of Dermal Fibroblasts from VL and PKDL patients |
Transcriptome analysis of Dermal Fibroblasts from VL and PKDL patients reveal disease specific gene expression and pathological regulation |
|
|
2024-09-02 |
PRJEB56308
|
|
| 9 |
INRP000035
|
Indica Rice Genome sequencing |
The study involves sequencing the whole genome of five indica rice varieties namely, Nagina22, IR64, Anjali, Vandana and Pusa Basmati1. Paired-end genomic libraries were prepared and sequenced using Illumina platform and assembled to find sequence variations between these varieties and the japonica Nipponbare genomic sequence. |
|
|
2023-10-01 |
PRJEB56693
|
|
| 10 |
INRP000036
|
Onion Mitochondrial Genome Sequencing of CMS and Maintainer Line |
Onion mitochondrial genome sequencing and comparative analysis of 97A CMS and 97B Maintainer line |
|
|
2024-10-27 |
PRJEB57244
|
|
| 11 |
INRP000037
|
Genome wide association mapping for key agronomic traits in Brassica juncea |
Creating a fully characterized genetic resource pipeline for mustard improvement programme in India |
|
|
2023-07-27 |
PRJEB57434
|
|
| 12 |
INRP000038
|
Emerging drug resistance in community-acquired urinary tract infection and molecular insights into dynamics of resistance traits in Indian isolates- A multi-centric cross-sectional study |
Genome profiling of Uropathogenic E.coli from community acquired UTI in paediatric patients. |
|
|
2023-07-01 |
PRJEB57435
|
|
| 13 |
INRP000044
|
Whole genome ChIP-seq analysis for three histone modifications in indica rice N22 and IR64 |
Chromatin immuno precipitation of three different histone modifications namely, H3K4me3, H3K27me3 and H3K9ac were performed in Oryza sativa subspe indica cv. IR64 and N22. |
|
|
2023-01-01 |
PRJEB58710
|
|
| 14 |
INRP000047
|
Whole genome bisulphite sequencing of drought tolerant and sensitive rice cultivars |
Analysis of whole genome methylation profiles of the drought sensitive and tolerant rice cultivars. Bisulphite sequencing was conducted for three tissues, panicle, flag leaf and root under control condition and drought stress. |
|
|
2023-02-01 |
PRJEB58713
|
|
| 15 |
INRP000050
|
Heterogeneity in antimicrobial resistance potency and functionality among multidrug- resistant Gram-negative pathogens: Phenotypic, genotypic and proteomic analysis |
AMR heterogeneity in Gram-negative pathogens |
|
|
2023-12-31 |
PRJNA925003
|
|
| 16 |
INRP000051
|
Molecular mapping of QTLs associated with grain elongation in Basmati rice - Oryza sativa L. |
Molecular Mapping of QTLs Associated with Grain Elongation in Basmati Rice was undertaken to identify QTLs associated with grain elongation in basmati rice using BSA and whole genome sequencing based on F2 population derived from self pollinated F1 plants generated from a cross between Basmati 370 and Pusa Basmati 1121. The identified QTLs associated with grain elongation can be further used in basmati rice breeding programmes for grain elongation. To identify the QTLs associated with grain elongation the following objectives were designed i. To accomplish morphological analysis for grain elongation along with the development of genotypic pools to carry out bulked segregant analysis in basmati rice ii. To identify genomic regions associated with grain elongation using BSA-sequencing and iii. To validate the identified QTLs associated with the grain elongation in basmati rice. |
|
|
2023-11-30 |
PRJEB60058
|
|
| 17 |
INRP000053
|
Genomics for conservation of indigenous cattle breeds and for enhancing milk yield-I |
Indigenous cattle breed sequencing |
|
|
2025-02-20 |
PRJEB63525
|
|
| 18 |
INRP000055
|
FH India |
Exome sequencing in Indian patients with definite Familial Hypercholesterolemia |
|
|
2025-01-24 |
PRJEB61804
|
|
| 19 |
INRP000058
|
Photosynthetic efficiency and transcriptome analysis of Dunaliella salina under hypersaline |
Understanding the molecular mechanisms of environmental salinity stress tolerance and
acclimation strategies by photosynthetic organisms facilitates accelerating the genetic
improvement of tolerant economically important crops |
|
|
2023-06-16 |
PRJEB61068
|
|
| 20 |
INRP000059
|
Comparison of sdRAD vs ddRAD in 48 genotypes of sesame |
A comparison between the efficiency, effectiveness, and feasibility between the two methodologies of restriction digestion based genotyping by sequencing, single and double digest, was performed in sesame to identify the best method of choice for large scale genotyping experiments. |
|
|
2023-04-01 |
PRJEB60972
|
|
| 21 |
INRP000062
|
Molecular diversity studies in sesame using ddRAD-seq approach |
Molecular diversity studies for 2496 sesame accessions using ddRAD-seq approach and a development of coreset using molecular data |
|
|
2024-04-16 |
PRJEB61739
|
|
| 22 |
INRP000063
|
16S Metagenomic Analysis Organic Waste Bio-composts |
16S rRNA metagenomic profiling of organic waste bio-composts |
|
|
2023-07-12 |
PRJEB62440
|
|
| 23 |
INRP000065
|
16S Metagenomic Analysis Soils amended with bio-composts |
16S rRNA metagenomic profiling of soils amended with different types of bio-compost |
|
|
2024-01-01 |
PRJEB62447
|
|
| 24 |
INRP000066
|
16S metagenomic analysis of underground water of Delhi |
16S rRNA Metagenomic profiling of underground water of Delhi to identify the beneficial and pathogenic bacteria. |
|
|
2024-01-01 |
PRJEB62623
|
|
| 25 |
INRP000068
|
16S metagenomic analysis of red amaranth |
16S metagenomic analysis of organically grown Red Amaranth grown with different soils |
|
|
2023-12-31 |
PRJEB62721
|
|
| 26 |
INRP000071
|
Resequencing of Indian wheat landraces |
Whole genome resequencing of Indian wheat landraces |
|
|
2025-06-19 |
PRJEB63273
|
|
| 27 |
INRP000072
|
Vigna umbellata WGS of cultivar:VRB3 Raw sequence reads |
PacBio and Illumina WGS reads of Vigna umbellata for genome assembly |
|
|
2023-06-21 |
PRJEB63305
|
|
| 28 |
INRP000073
|
Somatic Variations in naïve Prostate cancer and Castration resistant Prostate Cancer |
Clinico genetic prognostic signature for development of metastatic Castration
Resistant Prostate Cancer |
|
|
2025-06-20 |
PRJEB63609
|
|
| 29 |
INRP000074
|
Community-acquired UTI epidemiological study from four different geographical region. |
Phenotypic and genotypic distribution and epidemiology of ESBL positive, MDR
uropathogens in the community settings of India: A multicentric cross-sectional study |
|
|
2025-06-21 |
PRJEB63408
|
|
| 30 |
INRP000075
|
Sulfur metabolism in Mycobacterium tuberculosis |
Deciphering the role of sulfur metabolism in mycobacterial physiology and pathogenesis |
|
|
2025-06-27 |
PRJEB64040
|
|
| 31 |
INRP000076
|
VapC12 Host RNA Seq |
Transcriptomic analysis of VapC12 induced immuno modulation in host |
|
|
2024-06-30 |
PRJEB63988
|
|
| 32 |
INRP000077
|
Rv1906c mediated host immunomodulation |
Rv1906c mediated host immunomodulation in mice model of TB infection |
|
|
2025-07-01 |
PRJEB64201
|
|
| 33 |
INRP000078
|
Genomic analyses of three waterborne Escherichia coli strains of phylogroup D |
Genomic analyses of three waterborne Escherichia coli strains of phylogroup D |
|
|
2022-10-13 |
PRJNA890036
|
|
| 34 |
INRP000079
|
Enterococcus faecium strain:LR13 |
Comparative de novo genomic analysis of indigenous probiotic Enterococcus faecium LR13 reveals cholesterol-assimilation as an intrinsic strain specific trait |
|
|
2023-03-21 |
PRJNA866315
|
|
| 35 |
INRP000080
|
Rv0495c mediated host response |
Transcriptomic profiling of mouse lungs infected with WT and Rv0495c mutant of M. tuberculosis |
|
|
2024-06-01 |
PRJEB64000
|
|
| 36 |
INRP000081
|
In vitro transcriptomic profiling of Rv0452 mutant of M. tuberculosis |
In vitro transcriptomic profiling of Rv0452 mutant of M. tuberculosis |
|
|
2025-07-03 |
PRJEB64677
|
|
| 37 |
INRP000082
|
In vitro pH dependent transcriptomic profiling of Rv1906c mutant of Mycobacterium tuberculosis |
In vitro pH dependant transcriptomic profiling of Rv1906c mutant of Mycobacterium tuberculosis |
|
|
2025-07-05 |
PRJEB64152
|
|
| 38 |
INRP000083
|
Above and below ground biodiversity in different forage production systems (CRSCIGFRISIL20190203xxxxx) |
Study microbiome diversity in three different forage production systems Annual system perennial system and grassland
|
|
|
2023-07-07 |
PRJEB64147
|
|
| 39 |
INRP000084
|
Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice |
Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice |
|
|
2024-01-24 |
PRJEB70241
|
|
| 40 |
INRP000085
|
ITS metagenomic analysis of bio-composts |
ITS metagenomic analysis of the leaf waste bio-composts and other organic waste bio-composts |
|
|
2024-01-01 |
PRJEB64472
|
|
| 41 |
INRP000086
|
Differential Transcriptional landscape of Vero cells during DENV2 infection in the presence of Sinococuline |
Transcriptional alteration associated withSinococuline treatment in DENV2 infected Vero cells
|
|
|
2025-09-30 |
PRJEB65277
|
|
| 42 |
INRP000089
|
ITS metagenomic profiling of the soils amended with composts |
The ITS metagenomic profiling of different types of soils amended with different organic waste composts. |
|
|
2024-01-01 |
PRJEB67873
|
|
| 43 |
INRP000090
|
Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought (Asian cultivated rice) |
Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought |
|
|
2024-03-20 |
PRJNA972661
|
|
| 44 |
INRP000094
|
ITS metagenomic analysis of red amaranth |
ITS metagenomic analysis of red amaranth grown with two different soil types. |
|
|
2024-01-01 |
PRJEB65854
|
|
| 45 |
INRP000097
|
Role of pgmA in mycobacterial pathogenesis |
In this project we present a comprehensive characterization and functional analysis of mycobacterial pgmA focusing on its role in central metabolic flux under different environmental conditions We further analysed its implication in disease biology and pathogenesis We have employed a combination of biochemical and genetic approaches to elucidate the functional properties of this key enzyme in mycobacteria |
|
|
2024-08-23 |
PRJEB66126
|
|
| 46 |
INRP000098
|
Exploring genome diversity of Termite and termitarium from Western ghats for novel anti-microbials |
Exploring genome diversity of Termite and termitarium from Western ghats for novel anti-microbials |
|
|
2023-09-30 |
PRJEB66132
|
|
| 47 |
INRP000099
|
Genome-wide analysis of DNase hypersensitive sites in rice cultivars |
Genome-wide mapping of DNase I hypersensitive sites revealed differential chromatin accessibility in rice cultivars |
|
|
2024-06-11 |
PRJEB66718
|
|
| 48 |
INRP000100
|
Microbiome analysis of saliva from Oral Squamous Cell Carcinoma patients and tobacco abusers with potential biomarkers for Oral cancer screening |
Microbiome analysis of saliva from Oral Squamous Cell Carcinoma patients and tobacco abusers with potential biomarkers for Oral cancer screening |
|
|
2023-10-13 |
PRJEB67576
|
|
| 49 |
INRP000103
|
Bacillus anthracis strain: AP-RP1CH1 |
DBT Network Programme on Anthrax Diagnosis and Control in India
|
|
|
2024-06-12 |
PRJEB70776
|
|
| 50 |
INRP000104
|
Whole Genome Sequencing of Lambs-Ovis aries, kids-Capra hircus, Lactating goats -Capra hircus, Heifers -Bos taurus |
This study explores the versatile applications of culturable facultative anaerobic bacteria from the unique rumen ecosystem of lambs, kids, lactating goats and heifers. Utilizing a whole genome sequencing approach, the research seeks for isolating facultative ruminal bacteria, delving into their genetic capabilities for biotechnological advancements and establishing a comprehensive database containing their full length CAZymes, facilitating their potential industrial and medical utilization. |
|
|
2024-11-12 |
PRJEB88891
|
|
| 51 |
INRP000105
|
NeoOBS |
Neonatal sepsis - NeoOBS |
|
|
2025-11-17 |
PRJEB70236
|
|
| 52 |
INRP000106
|
Dormancy in Acinetobacter baumannii and Klebsiella pneumoniae Redefining Viable but Non-Culturable and Persister States |
Dormancy in Acinetobacter baumannii and Klebsiella pneumoniae: Redefining Viable but Non-Culturable and Persister States |
|
|
2025-05-15 |
PRJEB81419
|
|
| 53 |
INRP000107
|
DH study |
Neonatal sepsis in district hospitals |
|
|
2025-11-20 |
PRJEB70311
|
|
| 54 |
INRP000110
|
Bacillus anthracis strain: APRP2CH |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71758
|
|
| 55 |
INRP000111
|
Bacillus anthracis strain: APRP3CH |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71010
|
|
| 56 |
INRP000112
|
Bacillus anthracis strain: APZCH |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71062
|
|
| 57 |
INRP000114
|
Bacillus anthracis strain: KAC1971 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71760
|
|
| 58 |
INRP000115
|
Bacillus anthracis strain: APN3 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71574
|
|
| 59 |
INRP000116
|
Bacillus anthracis strain: APK1 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71575
|
|
| 60 |
INRP000117
|
Bacillus anthracis strain: APCH8 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71576
|
|
| 61 |
INRP000118
|
Bacillus anthracis strain: APA5 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71577
|
|
| 62 |
INRP000119
|
Bacillus anthracis strain: KAB420 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71690
|
|
| 63 |
INRP000120
|
Bacillus anthracis strain: KAC826 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71744
|
|
| 64 |
INRP000121
|
Bacillus anthracis strain: KAT2211 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71717
|
|
| 65 |
INRP000122
|
Bacillus anthracis strain: KAC2352 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71719
|
|
| 66 |
INRP000123
|
Bacillus anthracis strain: KAV2486 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71720
|
|
| 67 |
INRP000124
|
Bacillus anthracis strain: KAB726 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71721
|
|
| 68 |
INRP000125
|
Bacillus anthracis strain: APRSCH |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB71759
|
|
| 69 |
INRP000127
|
Genome Assembly of Indigenous Cattle using Linked Reads |
Genome sequencing of indigenous milch breeds of cattle using Linked-Read Technology to assemble a high-quality contiguous genome assembly. |
|
|
2025-02-22 |
PRJEB72252
|
|
| 70 |
INRP000128
|
Identification of key molecular factors involved in resistance or susceptibility to para-tuberculosis infection in indigenous breeds of cows. |
This study provides crucial insights into the transcriptomic and genomic landscape of both infected and uninfected cattle revealing key genes, lncRNAs and SNPs associated with the disease condition. By identifying DEGs and potential biomarkers linked to MAP infection, the study offers valuable contributions to disease management and molecular understanding. These markers hold promise for integration into breeding programs facilitating the selection of cattle with increased resistance to MAP infection. |
|
|
2024-04-20 |
PRJEB72268
|
|
| 71 |
INRP000130
|
Bacillus anthracis strain: ODK9 |
DBT Network Programme on Anthrax Diagnosis and Control in India |
|
|
2024-06-12 |
PRJEB72244
|
|
| 72 |
INRP000131
|
RSD mediated rpression of NIN and NLP2 activity is crucial for nodule devlopment |
Transcriptome data for Medicago truncatula R108 15 dpi nodules for analyzing stoichiometry of RSD and NIN.
Samples are transgenic nodules from pRSD vector control and pRSD-NIN 1-602 overexpression lines. |
|
|
2024-12-31 |
PRJEB72298
|
|
| 73 |
INRP000132
|
transcriptome of medicago nodule 6 dpi adn 15 dpi |
Peripheral vascular strand development in nodules is controlled by a bHLH/HLH
heterodimer |
|
|
2024-12-31 |
PRJEB72299
|
|
| 74 |
INRP000133
|
Translatome profiling of nodule invasion zone |
Translatome profiling followed by RNA sequencing |
|
|
2025-12-31 |
PRJEB72304
|
|
| 75 |
INRP000134
|
Genome sequence of safflower-A2 |
Whole genome sequencing of safflower A2 using PacBio HiFi reads, Optical mapping, HiC and Illumina paired-end reads |
|
|
2026-02-17 |
PRJEB74307
|
|
| 76 |
INRP000137
|
To explore the host genetic factors influencing the visceral leishmaniasis relapse in India by NGS exome analysis |
To explore the host genetic factors influencing the visceral leishmaniasis
relapse in India by NGS exome analysis |
|
|
2026-03-08 |
PRJEB73749
|
|
| 77 |
INRP000138
|
Genomics assisted pathobiology to identify novel targets for diagnosis and therapeutic intervention(s) of Japanese encephalitis and Leptospirosis. |
Genomic insights into Leptospira isolate from India |
|
|
2025-01-21 |
PRJEB74137
|
|
| 78 |
INRP000140
|
GBS of RIL population A |
New and improved genome assembly for Safflower using PacBio HiFi reads, Optical Mapping and Hi-C |
|
|
2026-04-02 |
PRJEB74492
|
|
| 79 |
INRP000142
|
Integrative genomic and proteomic insights into the functional potency of Lactobacillus species associated with term and preterm birth |
Integrative genomic and proteomic insights into the functional potency of Lactobacillus species associated with term and preterm birth |
|
|
2026-04-10 |
PRJEB74767
|
|
| 80 |
INRP000143
|
Single cell RNA sequencing of oral squamous cell carcinoma (OSCC) |
Intra-tumor cellular diversity plays an important role in cancer progression, recurrence, and overall survival of cancer patients. We used scRNA-seq to characterize the cell type and cell state diversity in the tumor ecosystem of OSCC. |
|
|
2024-04-19 |
PRJEB75028
|
|
| 81 |
INRP000144
|
Annotation of desi cattle reference genome |
Iso seq data for the annotation of reference genome assembly of desi cattle. |
|
|
2024-04-20 |
PRJEB75154
|
|
| 82 |
INRP000146
|
Differential gene expression analysis of Leishmania donovani infected macophages In a time dependent manner. |
RNAseq analysis of Leishmania donovani infected macrophages at 6hours,24hours,48hours post infection with respect to uninfected control. |
|
|
2025-01-01 |
PRJEB75777
|
|
| 83 |
INRP000147
|
Rumen and fecal microbiome in Goat (capra hircus) |
This study aims to investigate the ruminal and fecal microbial community derived from Goats (Capra hircus) on different interval of time. Utilizing a 18S amplicon sequencing approach, the research seeks to understand the how the diversity of ciliates shifts in rumen and fecal with changes in Coconut coir concentration in the diet. |
|
|
2024-11-12 |
PRJEB76491
|
|
| 84 |
INRP000148
|
RNA Methylation |
A Tale of Two Parasites: A Glimpse into the RNA Methylome of Patient-derived P. falciparum and P. vivax isolates
|
|
|
2025-05-23 |
PRJEB75779
|
|
| 85 |
INRP000149
|
Comparative genomics and genome evolution of Citrus |
Four cultivars of Mandarin, i.e., Nagpur Mandarin, Khasi Mandarin, Sikkim Mandarin, and Coorg Mandarin, and two cultivars of acid lime, i.e., NRCC7, and NRCC8, were resequenced. The study aims to do a comparative study with the other citrus genomes already available in the public database and to study the genome evolution of Indian cultivars. The genome data is also used to identify SNPs with peculiar characteristics like taste and flowering more than once a year. |
|
|
2024-06-12 |
PRJEB76428
|
|
| 86 |
INRP000151
|
Mesorhizobium tianshanense NI_DL7 whole genome sequence |
Mesorhizobium tianshanense NI DL7 whole genome sequence |
|
|
2024-07-31 |
PRJNA1119300
|
|
| 87 |
INRP000153
|
Small RNAs Sequencing (miRNA sequencing) |
Differential miRNA Expression in Seropositive and Seronegative First-degree Relatives of Celiac Disease Patients by High-throughput RNA sequencing. |
|
|
2026-07-04 |
PRJEB77299
|
|
| 88 |
INRP000156
|
Whole genome sequencing of Calamus brandisii |
Whole genome sequencing of Calamus brandisii (Male) |
|
|
2025-03-31 |
PRJEB78439
|
|
| 89 |
INRP000159
|
Whole genome sequencing of desi cattle to identify genetic variations associated with resistance and susceptibility to paratuberculosis infection. |
Whole genome sequencing was performed on Indian desi cattle to identify genetic variations associated with susceptibility and resistance to paratuberculosis, a chronic infectious disease caused by the bacterium Mycobacterium avium subspecies paratuberculosis . By comparing the genomes of cattle with differing disease outcomes, we aim to uncover genetic markers that can predict an individuals risk of infection and inform breeding strategies for disease resistance. |
|
|
2025-03-03 |
PRJEB78595
|
|
| 90 |
INRP000160
|
Whole genome sequencing of Calamus brandisii - Female |
Whole genome sequencing of Calamus brandisii - Female |
|
|
2025-03-31 |
PRJEB78638
|
|
| 91 |
INRP000163
|
Transcriptomic changes in Mycobacterium tuberculosis infected hepatocytes at early and late time points of infection |
Transcriptomic changes in Mycobacterium tuberculosis infected hepatocytes at early and late time points of infection |
|
|
2024-08-14 |
PRJNA1078382
|
|
| 92 |
INRP000164
|
Brassica nigra Transcriptome |
To identify the gene for stress tolerance available in Brassica, B-genome. |
|
|
2026-08-01 |
PRJEB79257
|
|
| 93 |
INRP000165
|
Brassica juncea Transcriptome Data |
RNA-Seq data of Brassica juncea |
|
|
2026-08-01 |
PRJEB79384
|
|
| 94 |
INRP000169
|
Candidate genes identification for heat tolerance related traits in chickpea |
Candidate genes identification for heat tolerance related traits in chickpea using whole genome resequencing based QTL seq approach |
|
|
2025-12-31 |
PRJEB85324
|
|
| 95 |
INRP000170
|
BSA Seq Approach to identify genomic regions associated with Earliness in Pea |
Identification of candidate region and diagnostic KASP markers associated with earliness in Pea through BSA-Seq Approach |
|
|
2026-01-01 |
PRJEB80149
|
|
| 96 |
INRP000177
|
Whole Transcriptome Sequencing of Capsicum chinense King Chilli from Manipur for identification of genes related to capsaicinoids and carotenoids |
Whole Transcriptome Sequencing of King Chilli from Manipur for identification of genes involved in biosynthesis of capsaicinoids and carotenoids |
|
|
2024-12-31 |
PRJEB81358
|
|
| 97 |
INRP000178
|
Whole Transcriptome Analysis of Capsicum annuum Sirarakhong Chilli |
Whole Transcriptome Analysis of Capsicum annuum Sirarakhong Chilli for understanding the flavour and aroma characteristics |
|
|
2024-12-29 |
PRJEB81359
|
|
| 98 |
INRP000179
|
Genomic surveillance for SARS-COV2 in India Indian SARS-COV2 genomic consortium (INSACOG) |
INSACOG |
|
|
2025-04-17 |
PRJEB81436
|
|
| 99 |
INRP000180
|
Core Collection resequencing of safflower |
Core collection for safflower was created by our group previously Kumar et al 2016, the current study undertakes whole genome resequencing of the same along with 7 additional lines of agronomic importance. |
|
|
2025-11-01 |
PRJEB81559
|
|
| 100 |
INRP000182
|
Rumen and fecal microbiome in lactating Goat (capra hircus) |
This study aims to investigate the impact of Moringa oleifera leaves on the gastrointestinal microbial community of lactating goats with a focus on elucidating whether the beneficial effects of Moringa are directly linked to changes in the microbial composition Through a metagenomic approach |
|
|
2024-12-31 |
PRJEB89572
|
|
| 101 |
INRP000183
|
Microbial Whole Genomics |
Microbial Whole Genomics study of pathogenic microorganisms isolated from different clinical and environmental samples |
|
|
2024-11-04 |
PRJEB82093
|
|
| 102 |
INRP000184
|
Genotyping of 3360 sesame accessions |
Genotyping of 3360 sesame accessions using ddRAD seq approach |
|
|
2025-03-31 |
PRJEB82853
|
|
| 103 |
INRP000185
|
Small RNA sequencing in Plasma of Indian Coronary artery disease patients |
The study investigates the potential small noncoding RNAs as non invasive biomarkers for coronary artery disease CAD using next generation sequencing NGS in an Indian cohort |
|
|
2026-11-04 |
PRJEB84198
|
|
| 104 |
INRP000188
|
Epigenetic Modifications in the Murine Liver upon Depletion of Transcriptional Coregulator Host Cell Factor 1 |
Epigenetic Modifications in the Murine Liver upon Depletion of Transcriptional Coregulator Host Cell Factor 1 |
|
|
2024-12-02 |
PRJEB82566
|
|
| 105 |
INRP000189
|
Fish tales of fatty liver A transcriptomic approach to understanding NAFLD |
Fish tales of fatty liver A transcriptomic approach to understanding NAFLD |
|
|
2024-12-05 |
PRJEB83101
|
|
| 106 |
INRP000190
|
Pan-transcriptome sequencing and analysis in chickpea |
Pan-transcriptome sequencing and analysis in chickpea |
|
|
2026-11-29 |
PRJEB82991
|
|
| 107 |
INRP000192
|
Bulk Segregant Analysis sequencing |
Molecular mapping of gynoecious trait in cucumber using BSA-seq |
|
|
2026-11-27 |
PRJEB82934
|
|
| 108 |
INRP000194
|
RNA-seq of developing limbs from conditional Met knockout embryos |
RNAseq of developing limbs from conditional Met knockout mouse embryos to identify genes regulated by Met signaling in mammalian skeletal muscle formation or myogenesis |
|
|
2026-11-27 |
PRJEB82980
|
|
| 109 |
INRP000213
|
RNASeq analysis of transgenic Arabidopsis lines overexpressing Pisum sativum SUN gene |
RNASeq analysis of transgenic Arabidopsis lines overexpressing Pisum sativum SUN gene |
|
|
2026-07-01 |
PRJEB83817
|
|
| 110 |
INRP000214
|
Genome wide association study for early seedling vigor in rice |
Identification of genomic regions or candidate genes for early seedling vigour in rice through genotyping by sequencing |
|
|
2027-01-21 |
PRJEB85120
|
|
| 111 |
INRP000243
|
From injury to recovery: Transcriptomic dynamics in Zebrafish brain regeneration |
From injury to recovery: Transcriptomic dynamics in Zebrafish brain regeneration |
|
|
2024-12-19 |
PRJEB83711
|
|
| 112 |
INRP000244
|
Identification of suitable RAD seq approach and restriction enzyme combination for genotyping of safflower |
Comparative Analysis of RADseq Methods for SNP Discovery and Genetic Diversity Assessment in Safflower |
|
|
2025-03-04 |
PRJEB83828
|
|
| 113 |
INRP000245
|
Ecoli-WGS |
Whole genome analysis of five multi drug resistance Escherichia coli clinical isolates reveals presence of multi AMR and virulence genes |
|
|
2025-01-15 |
PRJEB83778
|
|
| 114 |
INRP000246
|
SS04 |
Novel isolate from Indian soil and rice endophyte isolated from low land iron rich North East soil. |
|
|
2024-12-21 |
PRJEB83811
|
|
| 115 |
INRP000248
|
SS03 |
Novel Indian isolate that form nodules with Chickpea isolated from Meghalayan soil |
|
|
2024-12-21 |
PRJEB83812
|
|
| 116 |
INRP000249
|
Genome sequencing |
Isolated from Banpurva Baranashi Uttarprodash. |
|
|
2024-12-21 |
PRJEB83813
|
|
| 117 |
INRP000250
|
SS05 |
Isolated from developing cotton roll from Surat Agricultural farm. |
|
|
2024-12-21 |
PRJEB83814
|
|
| 118 |
INRP000252
|
Use of E. coli isolated from wastewater as an indicator organism for antimicrobial resistance monitoring in Meghalaya India. |
Whole Genome Sequencing of E. coli for antimicrobial resistance surveillance |
|
|
2025-05-31 |
PRJEB85647
|
|
| 119 |
INRP000253
|
SS03 |
Novel Indian isolate that form nodules with Chickpea isolated from Meghalayan soil |
|
|
2024-12-25 |
PRJEB83829
|
|
| 120 |
INRP000255
|
SS05 |
Isolated from developing cotton roll from Surat Agricultural farm. |
|
|
2024-12-25 |
PRJEB83830
|
|
| 121 |
INRP000257
|
The role of MYB46 in modulating polysaccharide acetylation by mediating the transcriptional regulation of cell wall related genes in Arabidopsis |
The role of MYB46 in modulating polysaccharide acetylation by mediating the transcriptional regulation of cell wall related genes in Arabidopsis |
|
|
2026-12-30 |
PRJEB83879
|
|
| 122 |
INRP000258
|
ddRAD sequencing of biparental population derived from Wazuhophek and Improved Samba Mahsuri |
Physiological and genetic basis of superior phosphate acquisition and root phosphorus utilization efficiency for rice landrace Wazuhophek |
|
|
2027-01-01 |
PRJEB83881
|
|
| 123 |
INRP000259
|
Investigation of the role of CASC19 in transcriptome of pancreatic cancer cell |
Investigating the effect of overexpression and knockdown of CASC19 in global transcriptome of pancreatic cancer cell by RNA sequencing |
|
|
2025-01-06 |
PRJEB84119
|
|
| 124 |
INRP000261
|
A hepatocyte-specific transcriptional program driven by Rela and Stat3 exacerbates experimental colitis in mice by modulating bile synthesis |
A hepatocyte-specific transcriptional program driven by Rela and Stat3 exacerbates experimental colitis in mice by modulating bile synthesis |
|
|
2025-01-06 |
PRJNA1017780
|
|
| 125 |
INRP000267
|
16s rRNA and ITS Amplicon Metagenomics of Soil and Natural Farming Input Samples of Wheat Experiment |
Study on 16s rRNA and ITS Amplicon Metagenomics of Soil and Natural Farming Input Samples under wheat cultivation |
|
|
2025-06-30 |
PRJEB84354
|
|
| 126 |
INRP000268
|
Transcriptome analysis during stigma development in saffron |
Transcriptome analysis during different stages of stigma development in saffron |
|
|
2026-12-31 |
PRJEB84193
|
|
| 127 |
INRP000270
|
CDFD-Bacterial Genome Sequencing Initiative for One Day One Genome (ODOG) Project |
This study, conducted by the Centre for DNA Fingerprinting and Diagnostics , Hyderabad, as part of the Department of Biotechnology , Government of India One Day One Genome initiative, focuses on the rapid sequencing of bacterial genomes.
The initiative aims to sequence and analyze the complete genomes of clinically relevant and environmental bacterial isolates within a single day.
This effort contributes to understanding bacterial pathogenicity, antimicrobial resistance , and virulence mechanisms. |
|
|
2025-01-15 |
PRJEB84425
|
|
| 128 |
INRP000273
|
WGS of Gut Bacterial Isolates |
Whole genome sequencing of various gut bacteria isolated from either tuberculosis patients at various time points of treatment or their healthy house-hold close contacts. |
|
|
2025-01-21 |
PRJNA1207706
|
|
| 129 |
INRP000274
|
Transcriptional dynamics in response to individual, combined, and sequential abiotic stresses at three severity levels and subsequent recovery in two contrasting genotypes of rice |
Comparative transcriptomics between two rice varieties performing best and least physiologically to an array of individual, combined and sequential abiotic stresses at mild, moderate and severe stages of the stress followed by recovery. The array includes drought, high temperature and submergence given individually or drought combined with high temperature or drought sequentially given post submergence. The analysis highlights the distinct transcriptomic responses of the two varieties. |
|
|
2027-01-20 |
PRJEB85229
|
|
| 130 |
INRP000275
|
MICROBIAL ANALYSIS ON SPIRULINA LIQUID BIOFERTILIZER AS BIOSTIMULANT ON CORIANDRUM SATIVUM |
This study explores the use of Spirulina spp. as a biofertilizer for Coriandrum sativum, focusing on its biostimulant effects. Soil samples treated with Spirulina biofertilizer were analyzed through metagenomics, targeting the bacterial community. 16S rRNA gene sequencing identified key bacterial species, with Phaselicystis flava and Woodsholea maritima being most abundant. Notably, Woodsholea maritima was found to promote plant growth. Other species like Brevundimonas vesicularis and Acinetobacter rhizosphaerae were also present. Beta diversity analysis revealed shifts in microbial community structure, supporting Spirulina biofertilizers potential as a sustainable, eco-friendly tool to enhance crop performance and productivity. |
|
|
2025-02-01 |
PRJEB85081
|
|
| 131 |
INRP000276
|
MICROBIAL ANALYSIS ON CHLORELLA LIQUID BIOFERTILIZER AS BIOSTIMULANT ON CORIANDRUM SATIVUM |
Chlorella a genus of microalgae has gained attention as a biofertilizer due to its beneficial effects on Plant Growth Promoting Rhizobacteria. This study evaluates the biostimulant effect of Chlorella liquid biofertilizer on Coriandrum sativum by analyzing microbial diversity in treated soil. Genomic DNA from soil samples is analyzed through 16S rRNA sequencing to assess microbial composition. The analysis reveals Acinetobacter rhizosphaerae and Pseudomonas fragi as dominant species with Acinetobacter rhizosphaerae comprising 25 percent of the total abundance and promoting plant growth. Other species like Brevundimonas vesicularis and Lysobacter brunescens are also identified highlighting the biofertilizers impact on soil microbial diversity. |
|
|
2025-02-01 |
PRJEB85124
|
|
| 132 |
INRP000277
|
Genome-wide association studies for earliness and other important traits in Lens culinaris |
Genotyping of lentil germplasm using a skim sequencing approach to identify marker-trait associations for important traits. |
|
|
2027-01-25 |
PRJEB85266
|
|
| 133 |
INRP000279
|
Developing Higher-order Knockout Population in Rice Through CRISPR-Cas9 Library Approach |
Developing Higher-order Knockout Population in Rice Through CRISPR-Cas9 Library Approach |
|
|
2027-01-31 |
PRJEB85442
|
|
| 134 |
INRP000280
|
GENOMIC DIVERISTY AND SELECTION SIGNATURE OF INDIAN NATIVE GOAT BREEDS |
GENOMIC DIVERSITY AND SELECTION SIGNATURE OF INDIAN NATIVE GOAT BREEDS |
|
|
2025-07-31 |
PRJEB86514
|
|
| 135 |
INRP000281
|
Whole Genome Analysis of a Bacterial Isolate from the Gut Microbiota of C57BL6J Mice |
The gut microbiota significantly influences host immunity and metabolism. This study
focuses on the whole genome analysis of a bacterial isolate from the gut microbiota of
C57BL6J mice. High throughput sequencing was performed to uncover its genetic
architecture, metabolic capabilities, and potential roles in host-microbiota interactions.
Functional annotation identified genes associated with nutrient metabolism and
antimicrobial resistance. Insights from this study enhance our understanding of the
functional contributions of gut microbiota to host health and provide a basis for exploring its
therapeutic potential. |
|
|
2025-02-13 |
PRJNA1219098
|
|
| 136 |
INRP000282
|
Linseed genome assembly |
Telomere to telomere genome of linseed assembled using data from PacBio, ONT, Illumina and Bionano |
|
|
2025-08-01 |
PRJEB87373
|
|
| 137 |
INRP000285
|
Whole genome sequencing of two mTB clinical isolates from Odisha. |
Whole genome sequencing of two mTB clinical isolates from Odisha. |
|
|
2025-03-31 |
PRJEB85779
|
|
| 138 |
INRP000286
|
Whole genome sequencing of mycobacterium bovis clinical isolates from Odisha. |
Whole genome sequencing of mycobacterium bovis clinical isolates from Odisha. |
|
|
2025-03-31 |
PRJEB85792
|
|
| 139 |
INRP000287
|
Whole genome sequencing |
Whole genome sequencing of rice wild relatives. |
|
|
2025-06-27 |
PRJEB85976
|
|
| 140 |
INRP000289
|
Whole genome sequencing of the chickpea dry root rot fungus from various locations across India |
Whole genome sequencing of the chickpea specific strains of the dry root rot fungus, Macrophomina phaseolina Tassi Goid. |
|
|
2027-01-01 |
PRJEB86034
|
|
| 141 |
INRP000292
|
Hybrid genome assembly and annotation of multidrug-resistant Staphylococcus aureus |
Hybrid genome assembly and annotation of multidrug-resistant Staphylococcus aureus genotype ST672-SCCmec type IVd 2B |
|
|
2025-02-28 |
PRJEB86754
|
|
| 142 |
INRP000293
|
Genotyping of safflower germplasm conserved in Indian National Genebank using ddRAD |
Genotyping of 5000 safflower germplasm conserved in Indian National Genebank using ddRAD sequence to be used in developing moelcular core and genome wide association studies of agrnomically important traits. |
|
|
2025-12-31 |
PRJEB86590
|
|
| 143 |
INRP000297
|
Genome Sequence of the Carotenoid-Producing Estuarine Oleaginous Yeast Rhodotorula pacifica INDKK Using Illumina and Nanopore Hybrid Assembly |
The hybrid denovo genome assembly resulted in 33.6 Mb genome size that was organized in total of 117 contigs with N50 value as 1123312 and GC content of 59.49 . |
|
|
2025-03-31 |
PRJEB87240
|
|
| 144 |
INRP000298
|
Genotyping of 161 sesame accessions |
Genotyping of 161 sesame accessions using ddRADseq approach |
|
|
2025-09-30 |
PRJEB86887
|
|
| 145 |
INRP000301
|
Analysis of endophytic microbes with antimicrobial activity |
Endophytic Alcaligens bacterium with potent antifungal and plant growth promoting activity. |
|
|
2025-03-12 |
PRJEB86996
|
|
| 146 |
INRP000302
|
Endophytic bacteria having strong insecticidal activity |
Endophytic bacteria exhibiting strong antimicrobial and PGPR activity |
|
|
2025-03-17 |
PRJEB86995
|
|
| 147 |
INRP000303
|
Linseed resequencing |
resequencing of linseed accessions |
|
|
2027-03-12 |
PRJEB87398
|
|
| 148 |
INRP000304
|
Bicontrol bacteria isolated from citrus plant |
Endophytic bacteria from citrus plant having potent antimicrobial activity. |
|
|
2025-03-17 |
PRJEB87211
|
|
| 149 |
INRP000305
|
Endophytic bacterium having strong biocontrol ability. |
Endophytic bacterium from tomato seedling exhibit strong antimicrobial property |
|
|
2025-03-17 |
PRJEB87220
|
|
| 150 |
INRP000306
|
Endophytic bacterium having strong Antimicrobial property |
Endophytic bacterium from tomato seedling exhibit strong antimicrobial property |
|
|
2025-03-17 |
PRJEB87221
|
|
| 151 |
INRP000307
|
8 Bacterial Whole Genome Sequences for one day one genome program isolated from Wastewater |
8 bacterial whole genome have been sequenced in Illumina NextSeq2000 platform isolated from Indian Urban Wastewater. |
|
|
2025-03-22 |
PRJEB87400
|
|
| 152 |
INRP000309
|
Whole genome sequence of Vibrio paracholerae isolated from the stool of diarrheal patient |
The emergence of Vibrio paracholerae isolates during the 7 th cholera pandemic has complicated disease management. To explore the evolution of antimicrobial resistance and virulence trait we sequenced the genome of clinical V. paracholerae isolates from India spanning 16 years from 2008 to 2023 |
|
|
2025-03-22 |
PRJEB87441
|
|
| 153 |
INRP000312
|
Transcriptomic Profiling of mucosal biopsy in Non IBS-IBD Individuals, IBS, and IBD Patients Using RNA-Seq |
Transcriptomic Analysis of mucosal Biopsy in Gut inflammation |
|
|
2026-04-03 |
PRJEB88196
|
|
| 154 |
INRP000314
|
16s rRNA and ITS Amplicon Metagenomics of Soil and Natural Farming Input Samples of Turmeric Experiment |
16s rRNA and ITS Amplicon Metagenomics of Soil and Natural Farming Input Samples of Turmeric Experiment |
|
|
2025-12-31 |
PRJEB88143
|
|
| 155 |
INRP000315
|
Two-Session Fecal Microbiota Transplantation Improves Hepatic Encephalopathy and Quality of Life in Cirrhosis: An open-label Pilot RCT |
Fecal microbiota transplantation has shown promise as a therapeutic option for overt hepatic encephalopathy in cirrhotic patients however, its role in minimal hepatic encephalopathy remains poorly understood. We aimed to evaluate the efficacy of FMT in improving MHE and quality of life in comparison to the standard treatment lactulose. |
|
|
2026-10-19 |
PRJEB88206
|
|
| 156 |
INRP000316
|
Fecal Microbiota Transplantation in GI Disease: A Randomised, Double-Blind, Sham-Controlled Trial on MDR Organism Decolonization and Gut Microbiome Modulation_16S |
Antimicrobial resistance has emerged as a major public health challenge and gut colonisation with multidrug-resistant organisms is a risk factor for infection with MDR organisms. Fecal microbiota transplantation can serve as a novel approach to deplete MDR colonisation, with bacteriophages playing a key role. There is no sham-controlled trial evaluating the role of FMT in MDRO decolonization.
|
|
|
2026-10-19 |
PRJEB88207
|
|
| 157 |
INRP000317
|
Fecal Microbiota Transplantation in GI Disease: A Randomised, Double-Blind, Sham-Controlled Trial on MDR Organism Decolonization and Gut Microbiome Modulation_ITS2-4 |
Antimicrobial resistance has emerged as a major public health challenge and gut colonisation with multidrug-resistant organisms is a risk factor for infection with MDR organisms. Fecal microbiota transplantation can serve as a novel approach to deplete MDR colonisation, with bacteriophages playing a key role. There is no sham-controlled trial evaluating the role of FMT in MDRO decolonization.
|
|
|
2026-10-19 |
PRJEB88208
|
|
| 158 |
INRP000318
|
Fecal Microbiota Transplantation in GI Disease: A Randomised, Double-Blind, Sham-Controlled Trial on MDR Organism Decolonization and Gut Microbiome Modulation_VLP |
Antimicrobial resistance has emerged as a major public health challenge and gut colonisation with multidrug-resistant organisms is a risk factor for infection with MDR organisms. Fecal microbiota transplantation can serve as a novel approach to deplete MDR colonisation, with bacteriophages playing a key role. There is no sham-controlled trial evaluating the role of FMT in MDRO decolonization. |
|
|
2026-10-19 |
PRJEB88209
|
|
| 159 |
INRP000319
|
A hybrid De novo Genome assembly of Saccharomyces cerevisae isolate NGY10 using Nanopore and Illumina Sequencing. |
A thermotolerant isolate, Saccharomyces cerevisiae NGY10, obtained from sugarcane distillery waste, exhibits high potential for lignocellulosic ethanol production. The strain is capable of efficient fermentation at 40 degree Celsius, achieving 92.81 and 86.43 percent fermentation efficiency during separate hydrolysis and fermentation and simulatenous saccharification and fermentation processes , respectively, using dilute acid-pretreated rice straw. The genome of NGY10 was sequenced using hybrid approach combining Illumina and Oxford Nanopore technologies. De novo assembly resulted in 39 contigs, with a total genome size of 12.8 Mb. |
|
|
2025-04-10 |
PRJEB88324
|
|
| 160 |
INRP000320
|
Whole Genome Sequencing of Anaerobes from Sheeps - Ovis aries and goats - Capra hircus |
This study aims to investigate rumen microbial isolates, particularly anaerobes, derived from Lambs Ovis aries, Lactating goats Capra hircus, and kids Capra hircus. These isolates were obtained from enrichment using modified Hungate medium with pectin as a substrate. Utilizing a whole genome sequencing approach, the research seeks to understand the culturable anaerobic isolates from the rumen fluid and potential of the same by analyzing the biomolecules. |
|
|
2025-04-30 |
PRJEB88899
|
|
| 161 |
INRP000321
|
Whole Genome Sequencing of faecal samples from Lambs Ovis aries, Kids Capra hircus, Lactating Goats Capra hircus, Heifers Bos taurus |
This study aims to investigate fungal isolates from faecal samples of Lambs Ovis aries, Lactating Goats Capra hircus, and Kids Capra hircus. Utilizing a whole genome sequencing approach for the eukaryotes, the research seeks to understand the fungal community from the faecal samples, functional genes, and their potential by analyzing the biomolecules. |
|
|
2025-04-30 |
PRJEB88900
|
|
| 162 |
INRP000324
|
AMR study |
Whole genome sequencing |
|
|
2025-12-25 |
PRJEB88949
|
|
| 163 |
INRP000325
|
Germline Variant Detection in Breast Cancer via Whole Exome Sequencing of Blood Samples |
This dataset comprises whole exome sequencing WES data derived from blood samples of 16 patients with clinically confirmed breast cancer. Genomic DNA was isolated from peripheral blood and subjected to exome capture and sequencing on the Illumina NextSeq 550 platform. This study aims to identify germline variants associated with breast cancer susceptibility and provide a reference for paired tumour normal comparative studies. Bioinformatics processing included read quality control, alignment to the human reference genome, variant calling, and functional annotation. |
|
|
2025-04-28 |
PRJEB89352
|
|
| 164 |
INRP000326
|
Genomic Analysis of Extensively Drug-Resistant Salmonella Typhi in Gujarat, India, under the Network Program on Antimicrobial Resistance, Superbugs, and One Health |
Genomic Analysis of Extensively Drug-Resistant Salmonella Typhi in Gujarat, India, under the Network Program on Antimicrobial Resistance, Superbugs, and One Health |
|
|
2025-04-29 |
PRJEB88981
|
|
| 165 |
INRP000327
|
WGS of Mixta calida of Indian Origin |
Comprehensive Genomic Analysis of Mixta calida Isolated from the Faecal Sample of a Tuberculosis Patient in India |
|
|
2026-05-17 |
PRJEB89099
|
|
| 166 |
INRP000330
|
Effect of moringa on microbes in gastrointestinal tract of sheep |
16S, 18S and ITS sequencing of samples from GIT of sheep fed with 0 percent and 17 percent Moringa |
|
|
2025-05-13 |
PRJEB89508
|
|
| 167 |
INRP000019
|
CLAVATA signaling pathway genes modulates agronomic traits in chickpea |
The CLAVATA3 gene homolog in chickpea regulates the flowering time and flower number in chickpea. A haplotype of this gene enhances yield without compromising any other agronomic traits. |
|
|
2021-08-27 |
PRJEB47198
|
|
| 168 |
INRP000048
|
miR158 locus and associated small RNAs |
Indian Himalayan natural Arabidopsis thaliana accessions with abolished miR158 levels exhibit robust miR173-initiated trans-acting cascade silencing |
|
|
2023-01-10 |
PRJEB58789
|
|
| 169 |
INRP000141
|
Identification and isolation of microorganisms from the Arabian Sea on the west coast of Karnataka, India |
Identification and isolation of microorganisms from the Arabian Sea on the west coast of Karnataka, India |
|
|
2024-07-08 |
PRJEB74629
|
|
| 170 |
INRP000154
|
Scrub Typhus Cluster Investigation and Risk Factors in Sundargarh District, Odisha, India, October 2023 |
Molecular Epidemiology of Orientia tsutsugamushi in Chiggers collected from Sundargarh district Odisha, Indi |
|
|
2024-07-20 |
PRJEB77515
|
|
| 171 |
INRP000158
|
Annual Programme of Research by the Zoological Survey of India, Kolkata |
Genetic analysis of Vertebrates |
|
|
2024-10-10 |
PRJEB77864
|
|
| 172 |
INRP000265
|
Detection of ChPV from North India |
Detection and Molecular characterization of Chicken Parvovirus from Haryana and nearby states |
|
|
2025-01-11 |
PRJEB84023
|
|
| 173 |
INRP000279
|
Developing Higher-order Knockout Population in Rice Through CRISPR-Cas9 Library Approach |
Developing Higher-order Knockout Population in Rice Through CRISPR-Cas9 Library Approach |
|
|
2027-01-31 |
PRJEB85442
|
|
| 174 |
INRP000288
|
TSG-Neutralization profiles of globally circulating contemporary HIV-1 clade C |
Distinct region-specific neutralization profiles of contemporary HIV-1 clade C against best-in- class broadly neutralizing antibodies |
|
|
2025-04-29 |
PRJEB86759
|
|
| 175 |
INRP000290
|
SCREENING, ISOLATION AND CHARACTERIZATION OF CELLULOLYTIC BACTERIA Bacillus sp. FROM PAPER INDUSTRY SLUDGE |
This study focuses on isolating efficient cellulase-producing bacteria from activated sludge of paper and pulp industry waste for potential large-scale biorefining. A novel strain, RAYS, was isolated and screened for cellulolytic activity using filter-paper strips and Congo red assays. Enzyme assays followed IUPAC methods, showing peak activity at 72 hours 37 degree Celsius , pH 7. 16S rRNA analysis revealed 94 percent similarity to Bacillus cereus and Bacillus anthracis, suggesting a new Bacillus species. |
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2025-03-23 |
PRJEB86041
|
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| 176 |
INRP000291
|
To evaluate viral diversity in LTBI and reactivation within PLHIV |
Evaluation of HIV-1C diversity at different stages of HIV-TB coinfection |
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2025-04-29 |
PRJEB86760
|
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| 177 |
INRP000333
|
Epstein-Barr Virus proteins and their association with oral cancer |
Epstein-Barr Virus proteins and their association with oral cancer |
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2025-05-19 |
PRJEB89702
|
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| 178 |
INRP000200
|
Mammaliicoccus lentus strain K169 |
Staphylococcus lentus K169 Genome sequencing |
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2024-12-10 |
PRJNA737659
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| 179 |
INRP000269
|
Microbe sample from Megasphaera elsdenii |
Draft genome sequence of Megasphaera elsedenii isolated from the gut of a healthy India |
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2025-01-14 |
PRJNA398182
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| 180 |
INRP000232
|
Vibrio cholerae strain:IDH08148 Genome sequencing and assembly |
Vibrio cholerae strain:IDH08148 |
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2024-12-19 |
PRJNA523107
|
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| 181 |
INRP000221
|
Fictibacillus fluitans strain:NE201 Genome sequencing and assembly |
Fictibacillus fluitans strain:NE201 |
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2024-12-17 |
PRJNA990360
|
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| 182 |
INRP000041
|
Chloroplast genome of Oryza officinalis |
Chloroplast genome sequence of Oryza officinalis |
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2022-12-26 |
PRJEB58648
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| 183 |
INRP000297
|
Genome Sequence of the Carotenoid-Producing Estuarine Oleaginous Yeast Rhodotorula pacifica INDKK Using Illumina and Nanopore Hybrid Assembly |
The hybrid denovo genome assembly resulted in 33.6 Mb genome size that was organized in total of 117 contigs with N50 value as 1123312 and GC content of 59.49 . |
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2025-03-31 |
PRJEB87240
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| 184 |
INRP000191
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Complete Genome Sequence of Lactobacillus sp Isolated from the high vaginal swab of pregnant Indian women |
Complete Genome Sequence of Lactobacillus sp Isolated from the high vaginal swab of pregnant Indian women |
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2024-12-10 |
PRJEB83316
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| 185 |
INRP000172
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RNAseq study of leaf, stem and root from Polygonum posumbu syn. Persicaria posumbu |
RNA sequencing and transcriptome assembly of Polygonum posumbu to identify genes involved in flavonoid biosynthesis pathway |
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2024-12-18 |
PRJEB80587
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| 186 |
INRP000242
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Paenibacillus sp. strain UniB2 |
Paenibacillus albicereus strain UniB2 Isolate Not applicable |
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2024-12-18 |
PRJNA624876
|
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| 187 |
INRP000236
|
Alkalihalobacterium chitinilyticum strain:MEB203 Genome sequencing and assembly |
Alkalihalobacterium chitinilyticum strain:MEB203 |
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2024-12-18 |
PRJNA882667
|
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| 188 |
INRP000235
|
Nitrincola tapanii strain:MEB193 Genome sequencing and assembly |
Nitrincola tapanii strain:MEB193 |
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2024-12-18 |
PRJNA525988
|
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| 189 |
INRP000327
|
WGS of Mixta calida of Indian Origin |
Comprehensive Genomic Analysis of Mixta calida Isolated from the Faecal Sample of a Tuberculosis Patient in India |
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2026-05-17 |
PRJEB89099
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| 190 |
INRP000212
|
Chakrabartia godavariana strain:PRB40 Genome sequencing and assembly |
Chakrabartia godavariana strain:PRB40 |
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2024-12-14 |
PRJNA498214
|
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| 191 |
INRP000218
|
Lipingzhangella rawalii strain:LS1-29 Genome sequencing and assembly |
Lipingzhangella rawalii strain LS1-29 |
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2024-12-17 |
PRJNA1014252
|
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| 192 |
INRP000240
|
Lactiplantibacillus plantarum strain:E2C2 Genome sequencing and assembly |
Lactiplantibacillus plantarum strain:E2C2 |
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2024-12-18 |
PRJNA311909
|
|
| 193 |
INRP000206
|
Rothia santali strain:AR01 Genome sequencing and assembly |
Rothia santali strain:AR01 |
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2024-12-14 |
PRJNA843603
|
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| 194 |
INRP000329
|
Complete Chloroplast genome of wild Musa species of India |
Comparative analysis the complete chloroplast genomes in wild Musa species of India for its phylogenetic and taxonomic implications |
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2025-06-02 |
PRJEB89527
|
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| 195 |
INRP000205
|
Molecular Insights into Antimicrobial Resistance Traits of Multidrug Resistant Enteric Pathogens isolated from India |
Study describes the whole genome information of salmonella typhi bacteria which was isolated from a acute diarrhea patient. |
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2024-12-15 |
PRJEB83584
|
|
| 196 |
INRP000223
|
Ureibacillus aquaedulcis strain:BA0131 Genome sequencing and assembly |
Ureibacillus aquaedulcis strain:BA0131 |
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2024-12-17 |
PRJNA990357
|
|
| 197 |
INRP000217
|
Klebsiella indica strain:TOUT106 Genome sequencing and assembly |
Klebsiella indica strain:TOUT106 |
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2024-12-17 |
PRJNA543754
|
|
| 198 |
INRP000219
|
Peteryoungia desertarenae strain:ADMK78 Genome sequencing |
Peteryoungia desertarenae strain:ADMK78 |
|
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2024-12-17 |
PRJNA543758
|
|
| 199 |
INRP000216
|
Rhizobium indicum strain:JKLM12A2 Genome sequencing |
Rhizobium indicum strain:JKLM12A2 |
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|
2024-12-17 |
PRJNA543966
|
|
| 200 |
INRP000202
|
Staphylococcus epidermidis strain:K3.2 |
Staphylococcus epidermidis K3.2 Genome sequencing |
|
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2024-12-10 |
PRJNA737462
|
|
| 201 |
INRP000215
|
Paenibacillus oleatilyticus strain:SM 69 Genome sequencing and assembly |
Paenibacillus oleatilyticus strain:SM 69 |
|
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2024-12-17 |
PRJNA737459
|
|
| 202 |
INRP000201
|
Mammaliicoccus sciuri strain K117.2 |
Staphylococcus sciuri K117.2 Genome sequencing |
|
|
2024-12-10 |
PRJNA737636
|
|
| 203 |
INRP000196
|
Genomic Insights into Natrialba swarupiae A New Bacterial Species Isolated from the Sambhar salt lake |
Natrialba swarupiae sp nov a halophilic archaeon isolated from a hypersaline lake in India |
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2024-12-01 |
PRJNA561681
|
|
| 204 |
INRP000134
|
Genome sequence of safflower-A2 |
Whole genome sequencing of safflower A2 using PacBio HiFi reads, Optical mapping, HiC and Illumina paired-end reads |
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2026-02-17 |
PRJEB74307
|
|
| 205 |
INRP000127
|
Genome Assembly of Indigenous Cattle using Linked Reads |
Genome sequencing of indigenous milch breeds of cattle using Linked-Read Technology to assemble a high-quality contiguous genome assembly. |
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2025-02-22 |
PRJEB72252
|
|
| 206 |
INRP000230
|
Vibrio cholerae strain:IDH06781 Genome sequencing and assembly |
Vibrio cholerae strain:IDH06781 |
|
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2024-12-19 |
PRJNA523099
|
|
| 207 |
INRP000222
|
Chryseobacterium urinae strain:APV1 Genome sequencing and assembly |
Chryseobacterium urinae strain:APV1 |
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2024-12-17 |
PRJNA989146
|
|
| 208 |
INRP000204
|
Complete Genome Sequence of Faecalibacterium prausnitzii Isolated from the Gut of a Healthy Indian Adult |
Faecalibacterium prausnitzii is the most abundant member of the phylum Firmicutes found in the colon of healthy humans. It is a strict anaerobe and plays an important role in intestinal homeostasis. Here, we report the complete genome sequence of F. prausnitzii strain Indica. |
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2024-12-13 |
PRJNA413728
|
|
| 209 |
INRP000207
|
Bacillus sp. strain UniB3 |
Niallia alba strain:UniB3 isolate:Not applicable |
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2024-12-13 |
PRJNA626649
|
|
| 210 |
INRP000195
|
Genomic Insights into Savagea serpentis |
Description and genomic insights into a multidrug resistant novel bacterium Savagea serpentis sp nov isolated from the scats of a vine snake Ahaetulla nasuta |
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2024-11-29 |
PRJNA673385
|
|
| 211 |
INRP000199
|
Staphylococcus aureus strain:A3.1 |
Staphylococcus aureus strain:A3.1 Genome sequencing and assembly |
|
|
2024-12-10 |
PRJNA737075
|
|
| 212 |
INRP000225
|
Collinsella aerofaciens strain:indica Genome sequencing |
Collinsella aerofaciens strain:indica
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|
|
2024-12-19 |
PRJNA415274
|
|
| 213 |
INRP000237
|
Alkalihalobacterium elongatum strain:MEB199 Genome sequencing and assembly |
Alkalihalobacterium elongatum strain:MEB199 |
|
|
2024-12-18 |
PRJNA590117
|
|
| 214 |
INRP000226
|
Segatella copri strain:Indica Genome sequencing and assembly |
Segatella copri strain:Indica |
|
|
2024-12-19 |
PRJNA393007
|
|
| 215 |
INRP000300
|
Burkholderia gladioli strain:NGJ1 |
Burkholderia gladioli strain:NGJ1 Genome sequencing and assembly |
|
|
2025-03-17 |
PRJNA286078
|
|
| 216 |
INRP000210
|
Ignatzschineria sp. RMDPL8A Genome sequencing and assembly |
Ignatzschineria sp. RMDPL8A |
|
|
2024-12-14 |
PRJNA907172
|
|
| 217 |
INRP000174
|
Whole Transcriptome Analysis of Capsicum chinense King Chilli |
Molecular characterisation of Capsicum chinense King Chilli for production of pungent and non pungent pigments |
|
|
2024-12-20 |
PRJEB80590
|
|
| 218 |
INRP000198
|
Alkalimonas cellulosilytica strain:MEB108 |
Alkalimonas cellulosilytica strain:MEB108 Genome sequencing and assembly |
|
|
2024-12-08 |
PRJNA989384
|
|
| 219 |
INRP000038
|
Emerging drug resistance in community-acquired urinary tract infection and molecular insights into dynamics of resistance traits in Indian isolates- A multi-centric cross-sectional study |
Genome profiling of Uropathogenic E.coli from community acquired UTI in paediatric patients. |
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|
2023-07-01 |
PRJEB57435
|
|
| 220 |
INRP000203
|
Staphylococcus chromogenes strain:K29 |
Staphylococcus chromogenes K29 Genome sequencing |
|
|
2024-12-10 |
PRJNA738617
|
|
| 221 |
INRP000224
|
Bifidobacterium longum strain Indica Genome sequencing and assembly |
Bifidobacterium longum strain Indica |
|
|
2024-12-19 |
PRJNA398177
|
|
| 222 |
INRP000233
|
Vibrio cholerae strain:IDH046 Genome sequencing and assembly |
Vibrio cholerae strain:IDH046 |
|
|
2024-12-19 |
PRJNA523098
|
|
| 223 |
INRP000072
|
Vigna umbellata WGS of cultivar:VRB3 Raw sequence reads |
PacBio and Illumina WGS reads of Vigna umbellata for genome assembly |
|
|
2023-06-21 |
PRJEB63305
|
|
| 224 |
INRP000319
|
A hybrid De novo Genome assembly of Saccharomyces cerevisae isolate NGY10 using Nanopore and Illumina Sequencing. |
A thermotolerant isolate, Saccharomyces cerevisiae NGY10, obtained from sugarcane distillery waste, exhibits high potential for lignocellulosic ethanol production. The strain is capable of efficient fermentation at 40 degree Celsius, achieving 92.81 and 86.43 percent fermentation efficiency during separate hydrolysis and fermentation and simulatenous saccharification and fermentation processes , respectively, using dilute acid-pretreated rice straw. The genome of NGY10 was sequenced using hybrid approach combining Illumina and Oxford Nanopore technologies. De novo assembly resulted in 39 contigs, with a total genome size of 12.8 Mb. |
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2025-04-10 |
PRJEB88324
|
|
| 225 |
INRP000173
|
RNA seq analysis for identification of genes involved in production of berberine in Zanthoxylum armatum |
RNA seq analysis fro identification of genes involved in berberine production from three tissue types of Zanthoxylum armatum |
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|
2024-12-19 |
PRJEB80589
|
|
| 226 |
INRP000060
|
Chloroplast genome assembly of Oryza meyeriana var indandamanica |
Chloroplast genome assembly of Oryza meyeriana var indandamanica was performed |
|
|
2023-04-30 |
PRJEB61731
|
|
| 227 |
INRP000211
|
Hydrogenophaga sp.strain BA0156 |
Hydrogenophaga crocea strain BA0156 |
|
|
2024-12-14 |
PRJNA611009
|
|
| 228 |
INRP000208
|
Methylophaga lonarensis MPL Genome sequencing and assembly |
Methylophaga lonarensis MPL |
|
|
2024-12-13 |
PRJNA186923
|
|
| 229 |
INRP000331
|
Exploring the role of metabolites in induction of Viable but Non-Culturable (VBNC) state in Klebsiella pneumoniae and Acinetobacter baumannii |
This study examines how environmental stressors such as antibiotics disinfectants food preservatives and industrial effluents induce the VBNC state in Klebsiella pneumoniae and Acinetobacter baumannii. Using a multiomic approach including metabolomics transcriptomics and genomics the research identifies key metabolic and genetic changes that help these pathogens survive in nonculturable but viable forms. Findings offer insights into bacterial persistence and potential strategies for improved detection and control. |
|
|
2025-05-19 |
PRJEB89678
|
|
| 230 |
INRP000209
|
Marisediminicola senii strain:SM7 A14 Genome sequencing and assembly |
Marisediminicola senii strain:SM7 A14 |
|
|
2024-12-14 |
PRJNA607684
|
|
| 231 |
INRP000074
|
Community-acquired UTI epidemiological study from four different geographical region. |
Phenotypic and genotypic distribution and epidemiology of ESBL positive, MDR
uropathogens in the community settings of India: A multicentric cross-sectional study |
|
|
2025-06-21 |
PRJEB63408
|
|
| 232 |
INRP000093
|
Hybrid genome sequencing of the sexually dimorphic Chrysolophus amherstiae |
Hybrid de novo genome assembly of the sexually dimorphic Chrysolophus amherstiae |
|
|
2025-09-01 |
PRJEB65867
|
|
| 233 |
INRP000197
|
Alkalimonas mucilaginosa strain:MEB004 |
Alkalimonas mucilaginosa strain:MEB004 Genome sequencing and assembly |
|
|
2024-12-09 |
PRJNA988303
|
|
| 234 |
INRP000278
|
WGS of Panicum sumatrense |
Whole genome assembly of Little millet |
|
|
2025-02-12 |
PRJEB85290
|
|
| 235 |
INRP000239
|
Bacillus sp. AM 13(2015) strain:AM 13 Genome sequencing and assembly |
Bacillus sp. AM 13 2015 strain:AM 13 |
|
|
2024-12-18 |
PRJNA295799
|
|
| 236 |
INRP000231
|
Vibrio cholerae strain:VCE232 Genome sequencing and assembly |
Vibrio cholerae strain:VCE232 |
|
|
2024-12-19 |
PRJNA523119
|
|
| 237 |
INRP000220
|
Natronococcus pandeyae strain:LS1_42 Genome sequencing and assembly |
Natronococcus pandeyae strain:LS1-42
|
|
|
2024-12-17 |
PRJNA419469
|
|
| 238 |
INRP000238
|
Halalkalibacter alkaliphilus strain:MEB205 Genome sequencing and assembly |
Halalkalibacter alkaliphilus strain:MEB205 |
|
|
2024-12-18 |
PRJNA806734
|
|
| 239 |
INRP000241
|
Lactiplantibacillus plantarum strain:E2C5 Genome sequencing and assembly |
Lactiplantibacillus plantarum strain E2C5 |
|
|
2024-12-18 |
PRJNA313343
|
|
