Indian Nucleotide Data Archive

A comprehensive record of the world's nucleotide sequencing information

Submitted Study Details . Total study submitted: 237, Total Submitted Run: 17505, Total Assembly submitted: 161, Total Sequence submitted: 740 Back

S. No INDA Accession Study Title Study Description Centre Name Submitted Date Release Date INSDC Accession No of Run
1 INRP000009 DNA methylation Whole Genome Bisulfite sequencing of rice 2021-06-23 PRJEB45886
2 INRP000010 Characterization of novel regulators for heat stress tolerance in tomato from Indian sub-continent transcriptome of tomato 2021-06-30 PRJEB45906
3 INRP000011 Drought resonsive miRNome of rice Charaterization of drought resonsive miRNome in flag leaf of rice. 2021-06-14 PRJEB45633
4 INRP000017 Investigations on regulation of miRNAs in rice reveal [Ca2+]cyt signal transduction regulated miRNAs Cytosolic calcium mediated regulation of miRNAs in rice cultivar N22. 2021-09-28 PRJEB47136
5 INRP000020 Variety-specific transcript accumulation during reproductive stage drought stress in rice RNA-Seq analysis of rice varieties Nagina22 and IR64 in adult tissues of Flag leaf, inflorescence and root under control and field drought conditions. 2021-10-15 PRJEB47431
6 INRP000029 Genomic Surveillance for SARS CoV 2 In India Indian SARS CoV 2 Genomics Consortium INSACOGG The proposed genomic surveillance for SARS CoV 2 In India is aimed at sustained detection of mutations in the viral genome from samples from all regions in India 2022-06-11 PRJEB53470
7 INRP000031 Genome sequencing and assembly of Brassica Carinata accession HC20 Brassica Carinata accession HC20 genome sequencing 2023-08-24 PRJEB55587
8 INRP000032 Transcriptome analysis of Dermal Fibroblasts from VL and PKDL patients Transcriptome analysis of Dermal Fibroblasts from VL and PKDL patients reveal disease specific gene expression and pathological regulation 2024-09-02 PRJEB56308
9 INRP000035 Indica Rice Genome sequencing The study involves sequencing the whole genome of five indica rice varieties namely, Nagina22, IR64, Anjali, Vandana and Pusa Basmati1. Paired-end genomic libraries were prepared and sequenced using Illumina platform and assembled to find sequence variations between these varieties and the japonica Nipponbare genomic sequence. 2023-10-01 PRJEB56693
10 INRP000036 Onion Mitochondrial Genome Sequencing of CMS and Maintainer Line Onion mitochondrial genome sequencing and comparative analysis of 97A CMS and 97B Maintainer line 2024-10-27 PRJEB57244
11 INRP000037 Genome wide association mapping for key agronomic traits in Brassica juncea Creating a fully characterized genetic resource pipeline for mustard improvement programme in India 2023-07-27 PRJEB57434
12 INRP000038 Emerging drug resistance in community-acquired urinary tract infection and molecular insights into dynamics of resistance traits in Indian isolates- A multi-centric cross-sectional study Genome profiling of Uropathogenic E.coli from community acquired UTI in paediatric patients. 2023-07-01 PRJEB57435
13 INRP000044 Whole genome ChIP-seq analysis for three histone modifications in indica rice N22 and IR64 Chromatin immuno precipitation of three different histone modifications namely, H3K4me3, H3K27me3 and H3K9ac were performed in Oryza sativa subspe indica cv. IR64 and N22. 2023-01-01 PRJEB58710
14 INRP000047 Whole genome bisulphite sequencing of drought tolerant and sensitive rice cultivars Analysis of whole genome methylation profiles of the drought sensitive and tolerant rice cultivars. Bisulphite sequencing was conducted for three tissues, panicle, flag leaf and root under control condition and drought stress. 2023-02-01 PRJEB58713
15 INRP000050 Heterogeneity in antimicrobial resistance potency and functionality among multidrug- resistant Gram-negative pathogens: Phenotypic, genotypic and proteomic analysis AMR heterogeneity in Gram-negative pathogens 2023-12-31 PRJNA925003
16 INRP000051 Molecular mapping of QTLs associated with grain elongation in Basmati rice - Oryza sativa L. Molecular Mapping of QTLs Associated with Grain Elongation in Basmati Rice was undertaken to identify QTLs associated with grain elongation in basmati rice using BSA and whole genome sequencing based on F2 population derived from self pollinated F1 plants generated from a cross between Basmati 370 and Pusa Basmati 1121. The identified QTLs associated with grain elongation can be further used in basmati rice breeding programmes for grain elongation. To identify the QTLs associated with grain elongation the following objectives were designed i. To accomplish morphological analysis for grain elongation along with the development of genotypic pools to carry out bulked segregant analysis in basmati rice ii. To identify genomic regions associated with grain elongation using BSA-sequencing and iii. To validate the identified QTLs associated with the grain elongation in basmati rice. 2023-11-30 PRJEB60058
17 INRP000053 Genomics for conservation of indigenous cattle breeds and for enhancing milk yield-I Indigenous cattle breed sequencing 2025-02-20 PRJEB63525
18 INRP000055 FH India Exome sequencing in Indian patients with definite Familial Hypercholesterolemia 2025-01-24 PRJEB61804
19 INRP000058 Photosynthetic efficiency and transcriptome analysis of Dunaliella salina under hypersaline Understanding the molecular mechanisms of environmental salinity stress tolerance and acclimation strategies by photosynthetic organisms facilitates accelerating the genetic improvement of tolerant economically important crops 2023-06-16 PRJEB61068
20 INRP000059 Comparison of sdRAD vs ddRAD in 48 genotypes of sesame A comparison between the efficiency, effectiveness, and feasibility between the two methodologies of restriction digestion based genotyping by sequencing, single and double digest, was performed in sesame to identify the best method of choice for large scale genotyping experiments. 2023-04-01 PRJEB60972
21 INRP000062 Molecular diversity studies in sesame using ddRAD-seq approach Molecular diversity studies for 2496 sesame accessions using ddRAD-seq approach and a development of coreset using molecular data 2024-04-16 PRJEB61739
22 INRP000063 16S Metagenomic Analysis Organic Waste Bio-composts 16S rRNA metagenomic profiling of organic waste bio-composts 2023-07-12 PRJEB62440
23 INRP000065 16S Metagenomic Analysis Soils amended with bio-composts 16S rRNA metagenomic profiling of soils amended with different types of bio-compost 2024-01-01 PRJEB62447
24 INRP000066 16S metagenomic analysis of underground water of Delhi 16S rRNA Metagenomic profiling of underground water of Delhi to identify the beneficial and pathogenic bacteria. 2024-01-01 PRJEB62623
25 INRP000068 16S metagenomic analysis of red amaranth 16S metagenomic analysis of organically grown Red Amaranth grown with different soils 2023-12-31 PRJEB62721
26 INRP000071 Resequencing of Indian wheat landraces Whole genome resequencing of Indian wheat landraces 2025-06-19 PRJEB63273
27 INRP000072 Vigna umbellata WGS of cultivar:VRB3 Raw sequence reads PacBio and Illumina WGS reads of Vigna umbellata for genome assembly 2023-06-21 PRJEB63305
28 INRP000073 Somatic Variations in naïve Prostate cancer and Castration resistant Prostate Cancer Clinico genetic prognostic signature for development of metastatic Castration Resistant Prostate Cancer 2025-06-20 PRJEB63609
29 INRP000074 Community-acquired UTI epidemiological study from four different geographical region. Phenotypic and genotypic distribution and epidemiology of ESBL positive, MDR uropathogens in the community settings of India: A multicentric cross-sectional study 2025-06-21 PRJEB63408
30 INRP000075 Sulfur metabolism in Mycobacterium tuberculosis Deciphering the role of sulfur metabolism in mycobacterial physiology and pathogenesis 2025-06-27 PRJEB64040
31 INRP000076 VapC12 Host RNA Seq Transcriptomic analysis of VapC12 induced immuno modulation in host 2024-06-30 PRJEB63988
32 INRP000077 Rv1906c mediated host immunomodulation Rv1906c mediated host immunomodulation in mice model of TB infection 2025-07-01 PRJEB64201
33 INRP000078 Genomic analyses of three waterborne Escherichia coli strains of phylogroup D Genomic analyses of three waterborne Escherichia coli strains of phylogroup D 2022-10-13 PRJNA890036
34 INRP000079 Enterococcus faecium strain:LR13 Comparative de novo genomic analysis of indigenous probiotic Enterococcus faecium LR13 reveals cholesterol-assimilation as an intrinsic strain specific trait 2023-03-21 PRJNA866315
35 INRP000080 Rv0495c mediated host response Transcriptomic profiling of mouse lungs infected with WT and Rv0495c mutant of M. tuberculosis 2024-06-01 PRJEB64000
36 INRP000081 In vitro transcriptomic profiling of Rv0452 mutant of M. tuberculosis In vitro transcriptomic profiling of Rv0452 mutant of M. tuberculosis 2025-07-03 PRJEB64677
37 INRP000082 In vitro pH dependent transcriptomic profiling of Rv1906c mutant of Mycobacterium tuberculosis In vitro pH dependant transcriptomic profiling of Rv1906c mutant of Mycobacterium tuberculosis 2025-07-05 PRJEB64152
38 INRP000083 Above and below ground biodiversity in different forage production systems (CRSCIGFRISIL20190203xxxxx) Study microbiome diversity in three different forage production systems Annual system perennial system and grassland 2023-07-07 PRJEB64147
39 INRP000084 Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice 2024-01-24 PRJEB70241
40 INRP000085 ITS metagenomic analysis of bio-composts ITS metagenomic analysis of the leaf waste bio-composts and other organic waste bio-composts 2024-01-01 PRJEB64472
41 INRP000086 Differential Transcriptional landscape of Vero cells during DENV2 infection in the presence of Sinococuline Transcriptional alteration associated withSinococuline treatment in DENV2 infected Vero cells 2025-09-30 PRJEB65277
42 INRP000089 ITS metagenomic profiling of the soils amended with composts The ITS metagenomic profiling of different types of soils amended with different organic waste composts. 2024-01-01 PRJEB67873
43 INRP000090 Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought (Asian cultivated rice) Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought 2024-03-20 PRJNA972661
44 INRP000094 ITS metagenomic analysis of red amaranth ITS metagenomic analysis of red amaranth grown with two different soil types. 2024-01-01 PRJEB65854
45 INRP000097 Role of pgmA in mycobacterial pathogenesis In this project we present a comprehensive characterization and functional analysis of mycobacterial pgmA focusing on its role in central metabolic flux under different environmental conditions We further analysed its implication in disease biology and pathogenesis We have employed a combination of biochemical and genetic approaches to elucidate the functional properties of this key enzyme in mycobacteria 2024-08-23 PRJEB66126
46 INRP000098 Exploring genome diversity of Termite and termitarium from Western ghats for novel anti-microbials Exploring genome diversity of Termite and termitarium from Western ghats for novel anti-microbials 2023-09-30 PRJEB66132
47 INRP000099 Genome-wide analysis of DNase hypersensitive sites in rice cultivars Genome-wide mapping of DNase I hypersensitive sites revealed differential chromatin accessibility in rice cultivars 2024-06-11 PRJEB66718
48 INRP000100 Microbiome analysis of saliva from Oral Squamous Cell Carcinoma patients and tobacco abusers with potential biomarkers for Oral cancer screening Microbiome analysis of saliva from Oral Squamous Cell Carcinoma patients and tobacco abusers with potential biomarkers for Oral cancer screening 2023-10-13 PRJEB67576
49 INRP000103 Bacillus anthracis strain: AP-RP1CH1 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB70776
50 INRP000104 Whole Genome Sequencing of Lambs-Ovis aries, kids-Capra hircus, Lactating goats -Capra hircus, Heifers -Bos taurus This study explores the versatile applications of culturable facultative anaerobic bacteria from the unique rumen ecosystem of lambs, kids, lactating goats and heifers. Utilizing a whole genome sequencing approach, the research seeks for isolating facultative ruminal bacteria, delving into their genetic capabilities for biotechnological advancements and establishing a comprehensive database containing their full length CAZymes, facilitating their potential industrial and medical utilization. 2024-11-12 PRJEB88891
51 INRP000105 NeoOBS Neonatal sepsis - NeoOBS 2025-11-17 PRJEB70236
52 INRP000106 Dormancy in Acinetobacter baumannii and Klebsiella pneumoniae Redefining Viable but Non-Culturable and Persister States Dormancy in Acinetobacter baumannii and Klebsiella pneumoniae: Redefining Viable but Non-Culturable and Persister States 2025-05-15 PRJEB81419
53 INRP000107 DH study Neonatal sepsis in district hospitals 2025-11-20 PRJEB70311
54 INRP000110 Bacillus anthracis strain: APRP2CH DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71758
55 INRP000111 Bacillus anthracis strain: APRP3CH DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71010
56 INRP000112 Bacillus anthracis strain: APZCH DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71062
57 INRP000114 Bacillus anthracis strain: KAC1971 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71760
58 INRP000115 Bacillus anthracis strain: APN3 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71574
59 INRP000116 Bacillus anthracis strain: APK1 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71575
60 INRP000117 Bacillus anthracis strain: APCH8 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71576
61 INRP000118 Bacillus anthracis strain: APA5 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71577
62 INRP000119 Bacillus anthracis strain: KAB420 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71690
63 INRP000120 Bacillus anthracis strain: KAC826 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71744
64 INRP000121 Bacillus anthracis strain: KAT2211 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71717
65 INRP000122 Bacillus anthracis strain: KAC2352 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71719
66 INRP000123 Bacillus anthracis strain: KAV2486 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71720
67 INRP000124 Bacillus anthracis strain: KAB726 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71721
68 INRP000125 Bacillus anthracis strain: APRSCH DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB71759
69 INRP000127 Genome Assembly of Indigenous Cattle using Linked Reads Genome sequencing of indigenous milch breeds of cattle using Linked-Read Technology to assemble a high-quality contiguous genome assembly. 2025-02-22 PRJEB72252
70 INRP000128 Identification of key molecular factors involved in resistance or susceptibility to para-tuberculosis infection in indigenous breeds of cows. This study provides crucial insights into the transcriptomic and genomic landscape of both infected and uninfected cattle revealing key genes, lncRNAs and SNPs associated with the disease condition. By identifying DEGs and potential biomarkers linked to MAP infection, the study offers valuable contributions to disease management and molecular understanding. These markers hold promise for integration into breeding programs facilitating the selection of cattle with increased resistance to MAP infection. 2024-04-20 PRJEB72268
71 INRP000130 Bacillus anthracis strain: ODK9 DBT Network Programme on Anthrax Diagnosis and Control in India 2024-06-12 PRJEB72244
72 INRP000131 RSD mediated rpression of NIN and NLP2 activity is crucial for nodule devlopment Transcriptome data for Medicago truncatula R108 15 dpi nodules for analyzing stoichiometry of RSD and NIN. Samples are transgenic nodules from pRSD vector control and pRSD-NIN 1-602 overexpression lines. 2024-12-31 PRJEB72298
73 INRP000132 transcriptome of medicago nodule 6 dpi adn 15 dpi Peripheral vascular strand development in nodules is controlled by a bHLH/HLH heterodimer 2024-12-31 PRJEB72299
74 INRP000133 Translatome profiling of nodule invasion zone Translatome profiling followed by RNA sequencing 2025-12-31 PRJEB72304
75 INRP000134 Genome sequence of safflower-A2 Whole genome sequencing of safflower A2 using PacBio HiFi reads, Optical mapping, HiC and Illumina paired-end reads 2026-02-17 PRJEB74307
76 INRP000137 To explore the host genetic factors influencing the visceral leishmaniasis relapse in India by NGS exome analysis To explore the host genetic factors influencing the visceral leishmaniasis relapse in India by NGS exome analysis 2026-03-08 PRJEB73749
77 INRP000138 Genomics assisted pathobiology to identify novel targets for diagnosis and therapeutic intervention(s) of Japanese encephalitis and Leptospirosis. Genomic insights into Leptospira isolate from India 2025-01-21 PRJEB74137
78 INRP000140 GBS of RIL population A New and improved genome assembly for Safflower using PacBio HiFi reads, Optical Mapping and Hi-C 2026-04-02 PRJEB74492
79 INRP000142 Integrative genomic and proteomic insights into the functional potency of Lactobacillus species associated with term and preterm birth Integrative genomic and proteomic insights into the functional potency of Lactobacillus species associated with term and preterm birth 2026-04-10 PRJEB74767
80 INRP000143 Single cell RNA sequencing of oral squamous cell carcinoma (OSCC) Intra-tumor cellular diversity plays an important role in cancer progression, recurrence, and overall survival of cancer patients. We used scRNA-seq to characterize the cell type and cell state diversity in the tumor ecosystem of OSCC. 2024-04-19 PRJEB75028
81 INRP000144 Annotation of desi cattle reference genome Iso seq data for the annotation of reference genome assembly of desi cattle. 2024-04-20 PRJEB75154
82 INRP000146 Differential gene expression analysis of Leishmania donovani infected macophages In a time dependent manner. RNAseq analysis of Leishmania donovani infected macrophages at 6hours,24hours,48hours post infection with respect to uninfected control. 2025-01-01 PRJEB75777
83 INRP000147 Rumen and fecal microbiome in Goat (capra hircus) This study aims to investigate the ruminal and fecal microbial community derived from Goats (Capra hircus) on different interval of time. Utilizing a 18S amplicon sequencing approach, the research seeks to understand the how the diversity of ciliates shifts in rumen and fecal with changes in Coconut coir concentration in the diet. 2024-11-12 PRJEB76491
84 INRP000148 RNA Methylation A Tale of Two Parasites: A Glimpse into the RNA Methylome of Patient-derived P. falciparum and P. vivax isolates 2025-05-23 PRJEB75779
85 INRP000149 Comparative genomics and genome evolution of Citrus Four cultivars of Mandarin, i.e., Nagpur Mandarin, Khasi Mandarin, Sikkim Mandarin, and Coorg Mandarin, and two cultivars of acid lime, i.e., NRCC7, and NRCC8, were resequenced. The study aims to do a comparative study with the other citrus genomes already available in the public database and to study the genome evolution of Indian cultivars. The genome data is also used to identify SNPs with peculiar characteristics like taste and flowering more than once a year. 2024-06-12 PRJEB76428
86 INRP000151 Mesorhizobium tianshanense NI_DL7 whole genome sequence Mesorhizobium tianshanense NI DL7 whole genome sequence 2024-07-31 PRJNA1119300
87 INRP000153 Small RNAs Sequencing (miRNA sequencing) Differential miRNA Expression in Seropositive and Seronegative First-degree Relatives of Celiac Disease Patients by High-throughput RNA sequencing. 2026-07-04 PRJEB77299
88 INRP000156 Whole genome sequencing of Calamus brandisii Whole genome sequencing of Calamus brandisii (Male) 2025-03-31 PRJEB78439
89 INRP000159 Whole genome sequencing of desi cattle to identify genetic variations associated with resistance and susceptibility to paratuberculosis infection. Whole genome sequencing was performed on Indian desi cattle to identify genetic variations associated with susceptibility and resistance to paratuberculosis, a chronic infectious disease caused by the bacterium Mycobacterium avium subspecies paratuberculosis . By comparing the genomes of cattle with differing disease outcomes, we aim to uncover genetic markers that can predict an individuals risk of infection and inform breeding strategies for disease resistance. 2025-03-03 PRJEB78595
90 INRP000160 Whole genome sequencing of Calamus brandisii - Female Whole genome sequencing of Calamus brandisii - Female 2025-03-31 PRJEB78638
91 INRP000163 Transcriptomic changes in Mycobacterium tuberculosis infected hepatocytes at early and late time points of infection Transcriptomic changes in Mycobacterium tuberculosis infected hepatocytes at early and late time points of infection 2024-08-14 PRJNA1078382
92 INRP000164 Brassica nigra Transcriptome To identify the gene for stress tolerance available in Brassica, B-genome. 2026-08-01 PRJEB79257
93 INRP000165 Brassica juncea Transcriptome Data RNA-Seq data of Brassica juncea 2026-08-01 PRJEB79384
94 INRP000169 Candidate genes identification for heat tolerance related traits in chickpea Candidate genes identification for heat tolerance related traits in chickpea using whole genome resequencing based QTL seq approach 2025-12-31 PRJEB85324
95 INRP000170 BSA Seq Approach to identify genomic regions associated with Earliness in Pea Identification of candidate region and diagnostic KASP markers associated with earliness in Pea through BSA-Seq Approach 2026-01-01 PRJEB80149
96 INRP000177 Whole Transcriptome Sequencing of Capsicum chinense King Chilli from Manipur for identification of genes related to capsaicinoids and carotenoids Whole Transcriptome Sequencing of King Chilli from Manipur for identification of genes involved in biosynthesis of capsaicinoids and carotenoids 2024-12-31 PRJEB81358
97 INRP000178 Whole Transcriptome Analysis of Capsicum annuum Sirarakhong Chilli Whole Transcriptome Analysis of Capsicum annuum Sirarakhong Chilli for understanding the flavour and aroma characteristics 2024-12-29 PRJEB81359
98 INRP000179 Genomic surveillance for SARS-COV2 in India Indian SARS-COV2 genomic consortium (INSACOG) INSACOG 2025-04-17 PRJEB81436
99 INRP000180 Core Collection resequencing of safflower Core collection for safflower was created by our group previously Kumar et al 2016, the current study undertakes whole genome resequencing of the same along with 7 additional lines of agronomic importance. 2025-11-01 PRJEB81559
100 INRP000182 Rumen and fecal microbiome in lactating Goat (capra hircus) This study aims to investigate the impact of Moringa oleifera leaves on the gastrointestinal microbial community of lactating goats with a focus on elucidating whether the beneficial effects of Moringa are directly linked to changes in the microbial composition Through a metagenomic approach 2024-12-31 PRJEB89572
101 INRP000183 Microbial Whole Genomics Microbial Whole Genomics study of pathogenic microorganisms isolated from different clinical and environmental samples 2024-11-04 PRJEB82093
102 INRP000184 Genotyping of 3360 sesame accessions Genotyping of 3360 sesame accessions using ddRAD seq approach 2025-03-31 PRJEB82853
103 INRP000185 Small RNA sequencing in Plasma of Indian Coronary artery disease patients The study investigates the potential small noncoding RNAs as non invasive biomarkers for coronary artery disease CAD using next generation sequencing NGS in an Indian cohort 2026-11-04 PRJEB84198
104 INRP000188 Epigenetic Modifications in the Murine Liver upon Depletion of Transcriptional Coregulator Host Cell Factor 1 Epigenetic Modifications in the Murine Liver upon Depletion of Transcriptional Coregulator Host Cell Factor 1 2024-12-02 PRJEB82566
105 INRP000189 Fish tales of fatty liver A transcriptomic approach to understanding NAFLD Fish tales of fatty liver A transcriptomic approach to understanding NAFLD 2024-12-05 PRJEB83101
106 INRP000190 Pan-transcriptome sequencing and analysis in chickpea Pan-transcriptome sequencing and analysis in chickpea 2026-11-29 PRJEB82991
107 INRP000192 Bulk Segregant Analysis sequencing Molecular mapping of gynoecious trait in cucumber using BSA-seq 2026-11-27 PRJEB82934
108 INRP000194 RNA-seq of developing limbs from conditional Met knockout embryos RNAseq of developing limbs from conditional Met knockout mouse embryos to identify genes regulated by Met signaling in mammalian skeletal muscle formation or myogenesis 2026-11-27 PRJEB82980
109 INRP000213 RNASeq analysis of transgenic Arabidopsis lines overexpressing Pisum sativum SUN gene RNASeq analysis of transgenic Arabidopsis lines overexpressing Pisum sativum SUN gene 2026-07-01 PRJEB83817
110 INRP000214 Genome wide association study for early seedling vigor in rice Identification of genomic regions or candidate genes for early seedling vigour in rice through genotyping by sequencing 2027-01-21 PRJEB85120
111 INRP000243 From injury to recovery: Transcriptomic dynamics in Zebrafish brain regeneration From injury to recovery: Transcriptomic dynamics in Zebrafish brain regeneration 2024-12-19 PRJEB83711
112 INRP000244 Identification of suitable RAD seq approach and restriction enzyme combination for genotyping of safflower Comparative Analysis of RADseq Methods for SNP Discovery and Genetic Diversity Assessment in Safflower 2025-03-04 PRJEB83828
113 INRP000245 Ecoli-WGS Whole genome analysis of five multi drug resistance Escherichia coli clinical isolates reveals presence of multi AMR and virulence genes 2025-01-15 PRJEB83778
114 INRP000246 SS04 Novel isolate from Indian soil and rice endophyte isolated from low land iron rich North East soil. 2024-12-21 PRJEB83811
115 INRP000248 SS03 Novel Indian isolate that form nodules with Chickpea isolated from Meghalayan soil 2024-12-21 PRJEB83812
116 INRP000249 Genome sequencing Isolated from Banpurva Baranashi Uttarprodash. 2024-12-21 PRJEB83813
117 INRP000250 SS05 Isolated from developing cotton roll from Surat Agricultural farm. 2024-12-21 PRJEB83814
118 INRP000252 Use of E. coli isolated from wastewater as an indicator organism for antimicrobial resistance monitoring in Meghalaya India. Whole Genome Sequencing of E. coli for antimicrobial resistance surveillance 2025-05-31 PRJEB85647
119 INRP000253 SS03 Novel Indian isolate that form nodules with Chickpea isolated from Meghalayan soil 2024-12-25 PRJEB83829
120 INRP000255 SS05 Isolated from developing cotton roll from Surat Agricultural farm. 2024-12-25 PRJEB83830
121 INRP000257 The role of MYB46 in modulating polysaccharide acetylation by mediating the transcriptional regulation of cell wall related genes in Arabidopsis The role of MYB46 in modulating polysaccharide acetylation by mediating the transcriptional regulation of cell wall related genes in Arabidopsis 2026-12-30 PRJEB83879
122 INRP000258 ddRAD sequencing of biparental population derived from Wazuhophek and Improved Samba Mahsuri Physiological and genetic basis of superior phosphate acquisition and root phosphorus utilization efficiency for rice landrace Wazuhophek 2027-01-01 PRJEB83881
123 INRP000259 Investigation of the role of CASC19 in transcriptome of pancreatic cancer cell Investigating the effect of overexpression and knockdown of CASC19 in global transcriptome of pancreatic cancer cell by RNA sequencing 2025-01-06 PRJEB84119
124 INRP000261 A hepatocyte-specific transcriptional program driven by Rela and Stat3 exacerbates experimental colitis in mice by modulating bile synthesis A hepatocyte-specific transcriptional program driven by Rela and Stat3 exacerbates experimental colitis in mice by modulating bile synthesis 2025-01-06 PRJNA1017780
125 INRP000267 16s rRNA and ITS Amplicon Metagenomics of Soil and Natural Farming Input Samples of Wheat Experiment Study on 16s rRNA and ITS Amplicon Metagenomics of Soil and Natural Farming Input Samples under wheat cultivation 2025-06-30 PRJEB84354
126 INRP000268 Transcriptome analysis during stigma development in saffron Transcriptome analysis during different stages of stigma development in saffron 2026-12-31 PRJEB84193
127 INRP000270 CDFD-Bacterial Genome Sequencing Initiative for One Day One Genome (ODOG) Project This study, conducted by the Centre for DNA Fingerprinting and Diagnostics , Hyderabad, as part of the Department of Biotechnology , Government of India One Day One Genome initiative, focuses on the rapid sequencing of bacterial genomes. The initiative aims to sequence and analyze the complete genomes of clinically relevant and environmental bacterial isolates within a single day. This effort contributes to understanding bacterial pathogenicity, antimicrobial resistance , and virulence mechanisms. 2025-01-15 PRJEB84425
128 INRP000273 WGS of Gut Bacterial Isolates Whole genome sequencing of various gut bacteria isolated from either tuberculosis patients at various time points of treatment or their healthy house-hold close contacts. 2025-01-21 PRJNA1207706
129 INRP000274 Transcriptional dynamics in response to individual, combined, and sequential abiotic stresses at three severity levels and subsequent recovery in two contrasting genotypes of rice Comparative transcriptomics between two rice varieties performing best and least physiologically to an array of individual, combined and sequential abiotic stresses at mild, moderate and severe stages of the stress followed by recovery. The array includes drought, high temperature and submergence given individually or drought combined with high temperature or drought sequentially given post submergence. The analysis highlights the distinct transcriptomic responses of the two varieties. 2027-01-20 PRJEB85229
130 INRP000275 MICROBIAL ANALYSIS ON SPIRULINA LIQUID BIOFERTILIZER AS BIOSTIMULANT ON CORIANDRUM SATIVUM This study explores the use of Spirulina spp. as a biofertilizer for Coriandrum sativum, focusing on its biostimulant effects. Soil samples treated with Spirulina biofertilizer were analyzed through metagenomics, targeting the bacterial community. 16S rRNA gene sequencing identified key bacterial species, with Phaselicystis flava and Woodsholea maritima being most abundant. Notably, Woodsholea maritima was found to promote plant growth. Other species like Brevundimonas vesicularis and Acinetobacter rhizosphaerae were also present. Beta diversity analysis revealed shifts in microbial community structure, supporting Spirulina biofertilizers potential as a sustainable, eco-friendly tool to enhance crop performance and productivity. 2025-02-01 PRJEB85081
131 INRP000276 MICROBIAL ANALYSIS ON CHLORELLA LIQUID BIOFERTILIZER AS BIOSTIMULANT ON CORIANDRUM SATIVUM Chlorella a genus of microalgae has gained attention as a biofertilizer due to its beneficial effects on Plant Growth Promoting Rhizobacteria. This study evaluates the biostimulant effect of Chlorella liquid biofertilizer on Coriandrum sativum by analyzing microbial diversity in treated soil. Genomic DNA from soil samples is analyzed through 16S rRNA sequencing to assess microbial composition. The analysis reveals Acinetobacter rhizosphaerae and Pseudomonas fragi as dominant species with Acinetobacter rhizosphaerae comprising 25 percent of the total abundance and promoting plant growth. Other species like Brevundimonas vesicularis and Lysobacter brunescens are also identified highlighting the biofertilizers impact on soil microbial diversity. 2025-02-01 PRJEB85124
132 INRP000277 Genome-wide association studies for earliness and other important traits in Lens culinaris Genotyping of lentil germplasm using a skim sequencing approach to identify marker-trait associations for important traits. 2027-01-25 PRJEB85266
133 INRP000279 Developing Higher-order Knockout Population in Rice Through CRISPR-Cas9 Library Approach Developing Higher-order Knockout Population in Rice Through CRISPR-Cas9 Library Approach 2027-01-31 PRJEB85442
134 INRP000280 GENOMIC DIVERISTY AND SELECTION SIGNATURE OF INDIAN NATIVE GOAT BREEDS GENOMIC DIVERSITY AND SELECTION SIGNATURE OF INDIAN NATIVE GOAT BREEDS 2025-07-31 PRJEB86514
135 INRP000281 Whole Genome Analysis of a Bacterial Isolate from the Gut Microbiota of C57BL6J Mice The gut microbiota significantly influences host immunity and metabolism. This study focuses on the whole genome analysis of a bacterial isolate from the gut microbiota of C57BL6J mice. High throughput sequencing was performed to uncover its genetic architecture, metabolic capabilities, and potential roles in host-microbiota interactions. Functional annotation identified genes associated with nutrient metabolism and antimicrobial resistance. Insights from this study enhance our understanding of the functional contributions of gut microbiota to host health and provide a basis for exploring its therapeutic potential. 2025-02-13 PRJNA1219098
136 INRP000282 Linseed genome assembly Telomere to telomere genome of linseed assembled using data from PacBio, ONT, Illumina and Bionano 2025-08-01 PRJEB87373
137 INRP000285 Whole genome sequencing of two mTB clinical isolates from Odisha. Whole genome sequencing of two mTB clinical isolates from Odisha. 2025-03-31 PRJEB85779
138 INRP000286 Whole genome sequencing of mycobacterium bovis clinical isolates from Odisha. Whole genome sequencing of mycobacterium bovis clinical isolates from Odisha. 2025-03-31 PRJEB85792
139 INRP000287 Whole genome sequencing Whole genome sequencing of rice wild relatives. 2025-06-27 PRJEB85976
140 INRP000289 Whole genome sequencing of the chickpea dry root rot fungus from various locations across India Whole genome sequencing of the chickpea specific strains of the dry root rot fungus, Macrophomina phaseolina Tassi Goid. 2027-01-01 PRJEB86034
141 INRP000292 Hybrid genome assembly and annotation of multidrug-resistant Staphylococcus aureus Hybrid genome assembly and annotation of multidrug-resistant Staphylococcus aureus genotype ST672-SCCmec type IVd 2B 2025-02-28 PRJEB86754
142 INRP000293 Genotyping of safflower germplasm conserved in Indian National Genebank using ddRAD Genotyping of 5000 safflower germplasm conserved in Indian National Genebank using ddRAD sequence to be used in developing moelcular core and genome wide association studies of agrnomically important traits. 2025-12-31 PRJEB86590
143 INRP000297 Genome Sequence of the Carotenoid-Producing Estuarine Oleaginous Yeast Rhodotorula pacifica INDKK Using Illumina and Nanopore Hybrid Assembly The hybrid denovo genome assembly resulted in 33.6 Mb genome size that was organized in total of 117 contigs with N50 value as 1123312 and GC content of 59.49 . 2025-03-31 PRJEB87240
144 INRP000298 Genotyping of 161 sesame accessions Genotyping of 161 sesame accessions using ddRADseq approach 2025-09-30 PRJEB86887
145 INRP000301 Analysis of endophytic microbes with antimicrobial activity Endophytic Alcaligens bacterium with potent antifungal and plant growth promoting activity. 2025-03-12 PRJEB86996
146 INRP000302 Endophytic bacteria having strong insecticidal activity Endophytic bacteria exhibiting strong antimicrobial and PGPR activity 2025-03-17 PRJEB86995
147 INRP000303 Linseed resequencing resequencing of linseed accessions 2027-03-12 PRJEB87398
148 INRP000304 Bicontrol bacteria isolated from citrus plant Endophytic bacteria from citrus plant having potent antimicrobial activity. 2025-03-17 PRJEB87211
149 INRP000305 Endophytic bacterium having strong biocontrol ability. Endophytic bacterium from tomato seedling exhibit strong antimicrobial property 2025-03-17 PRJEB87220
150 INRP000306 Endophytic bacterium having strong Antimicrobial property Endophytic bacterium from tomato seedling exhibit strong antimicrobial property 2025-03-17 PRJEB87221
151 INRP000307 8 Bacterial Whole Genome Sequences for one day one genome program isolated from Wastewater 8 bacterial whole genome have been sequenced in Illumina NextSeq2000 platform isolated from Indian Urban Wastewater. 2025-03-22 PRJEB87400
152 INRP000309 Whole genome sequence of Vibrio paracholerae isolated from the stool of diarrheal patient The emergence of Vibrio paracholerae isolates during the 7 th cholera pandemic has complicated disease management. To explore the evolution of antimicrobial resistance and virulence trait we sequenced the genome of clinical V. paracholerae isolates from India spanning 16 years from 2008 to 2023 2025-03-22 PRJEB87441
153 INRP000312 Transcriptomic Profiling of mucosal biopsy in Non IBS-IBD Individuals, IBS, and IBD Patients Using RNA-Seq Transcriptomic Analysis of mucosal Biopsy in Gut inflammation 2026-04-03 PRJEB88196
154 INRP000314 16s rRNA and ITS Amplicon Metagenomics of Soil and Natural Farming Input Samples of Turmeric Experiment 16s rRNA and ITS Amplicon Metagenomics of Soil and Natural Farming Input Samples of Turmeric Experiment 2025-12-31 PRJEB88143
155 INRP000315 Two-Session Fecal Microbiota Transplantation Improves Hepatic Encephalopathy and Quality of Life in Cirrhosis: An open-label Pilot RCT Fecal microbiota transplantation has shown promise as a therapeutic option for overt hepatic encephalopathy in cirrhotic patients however, its role in minimal hepatic encephalopathy remains poorly understood. We aimed to evaluate the efficacy of FMT in improving MHE and quality of life in comparison to the standard treatment lactulose. 2026-10-19 PRJEB88206
156 INRP000316 Fecal Microbiota Transplantation in GI Disease: A Randomised, Double-Blind, Sham-Controlled Trial on MDR Organism Decolonization and Gut Microbiome Modulation_16S Antimicrobial resistance has emerged as a major public health challenge and gut colonisation with multidrug-resistant organisms is a risk factor for infection with MDR organisms. Fecal microbiota transplantation can serve as a novel approach to deplete MDR colonisation, with bacteriophages playing a key role. There is no sham-controlled trial evaluating the role of FMT in MDRO decolonization. 2026-10-19 PRJEB88207
157 INRP000317 Fecal Microbiota Transplantation in GI Disease: A Randomised, Double-Blind, Sham-Controlled Trial on MDR Organism Decolonization and Gut Microbiome Modulation_ITS2-4 Antimicrobial resistance has emerged as a major public health challenge and gut colonisation with multidrug-resistant organisms is a risk factor for infection with MDR organisms. Fecal microbiota transplantation can serve as a novel approach to deplete MDR colonisation, with bacteriophages playing a key role. There is no sham-controlled trial evaluating the role of FMT in MDRO decolonization. 2026-10-19 PRJEB88208
158 INRP000318 Fecal Microbiota Transplantation in GI Disease: A Randomised, Double-Blind, Sham-Controlled Trial on MDR Organism Decolonization and Gut Microbiome Modulation_VLP Antimicrobial resistance has emerged as a major public health challenge and gut colonisation with multidrug-resistant organisms is a risk factor for infection with MDR organisms. Fecal microbiota transplantation can serve as a novel approach to deplete MDR colonisation, with bacteriophages playing a key role. There is no sham-controlled trial evaluating the role of FMT in MDRO decolonization. 2026-10-19 PRJEB88209
159 INRP000319 A hybrid De novo Genome assembly of Saccharomyces cerevisae isolate NGY10 using Nanopore and Illumina Sequencing. A thermotolerant isolate, Saccharomyces cerevisiae NGY10, obtained from sugarcane distillery waste, exhibits high potential for lignocellulosic ethanol production. The strain is capable of efficient fermentation at 40 degree Celsius, achieving 92.81 and 86.43 percent fermentation efficiency during separate hydrolysis and fermentation and simulatenous saccharification and fermentation processes , respectively, using dilute acid-pretreated rice straw. The genome of NGY10 was sequenced using hybrid approach combining Illumina and Oxford Nanopore technologies. De novo assembly resulted in 39 contigs, with a total genome size of 12.8 Mb. 2025-04-10 PRJEB88324
160 INRP000320 Whole Genome Sequencing of Anaerobes from Sheeps - Ovis aries and goats - Capra hircus This study aims to investigate rumen microbial isolates, particularly anaerobes, derived from Lambs Ovis aries, Lactating goats Capra hircus, and kids Capra hircus. These isolates were obtained from enrichment using modified Hungate medium with pectin as a substrate. Utilizing a whole genome sequencing approach, the research seeks to understand the culturable anaerobic isolates from the rumen fluid and potential of the same by analyzing the biomolecules. 2025-04-30 PRJEB88899
161 INRP000321 Whole Genome Sequencing of faecal samples from Lambs Ovis aries, Kids Capra hircus, Lactating Goats Capra hircus, Heifers Bos taurus This study aims to investigate fungal isolates from faecal samples of Lambs Ovis aries, Lactating Goats Capra hircus, and Kids Capra hircus. Utilizing a whole genome sequencing approach for the eukaryotes, the research seeks to understand the fungal community from the faecal samples, functional genes, and their potential by analyzing the biomolecules. 2025-04-30 PRJEB88900
162 INRP000324 AMR study Whole genome sequencing 2025-12-25 PRJEB88949
163 INRP000325 Germline Variant Detection in Breast Cancer via Whole Exome Sequencing of Blood Samples This dataset comprises whole exome sequencing WES data derived from blood samples of 16 patients with clinically confirmed breast cancer. Genomic DNA was isolated from peripheral blood and subjected to exome capture and sequencing on the Illumina NextSeq 550 platform. This study aims to identify germline variants associated with breast cancer susceptibility and provide a reference for paired tumour normal comparative studies. Bioinformatics processing included read quality control, alignment to the human reference genome, variant calling, and functional annotation. 2025-04-28 PRJEB89352
164 INRP000326 Genomic Analysis of Extensively Drug-Resistant Salmonella Typhi in Gujarat, India, under the Network Program on Antimicrobial Resistance, Superbugs, and One Health Genomic Analysis of Extensively Drug-Resistant Salmonella Typhi in Gujarat, India, under the Network Program on Antimicrobial Resistance, Superbugs, and One Health 2025-04-29 PRJEB88981
165 INRP000327 WGS of Mixta calida of Indian Origin Comprehensive Genomic Analysis of Mixta calida Isolated from the Faecal Sample of a Tuberculosis Patient in India 2026-05-17 PRJEB89099
166 INRP000330 Effect of moringa on microbes in gastrointestinal tract of sheep 16S, 18S and ITS sequencing of samples from GIT of sheep fed with 0 percent and 17 percent Moringa 2025-05-13 PRJEB89508
167 INRP000019 CLAVATA signaling pathway genes modulates agronomic traits in chickpea The CLAVATA3 gene homolog in chickpea regulates the flowering time and flower number in chickpea. A haplotype of this gene enhances yield without compromising any other agronomic traits. 2021-08-27 PRJEB47198
168 INRP000048 miR158 locus and associated small RNAs Indian Himalayan natural Arabidopsis thaliana accessions with abolished miR158 levels exhibit robust miR173-initiated trans-acting cascade silencing 2023-01-10 PRJEB58789
169 INRP000141 Identification and isolation of microorganisms from the Arabian Sea on the west coast of Karnataka, India Identification and isolation of microorganisms from the Arabian Sea on the west coast of Karnataka, India 2024-07-08 PRJEB74629
170 INRP000154 Scrub Typhus Cluster Investigation and Risk Factors in Sundargarh District, Odisha, India, October 2023 Molecular Epidemiology of Orientia tsutsugamushi in Chiggers collected from Sundargarh district Odisha, Indi 2024-07-20 PRJEB77515
171 INRP000158 Annual Programme of Research by the Zoological Survey of India, Kolkata Genetic analysis of Vertebrates 2024-10-10 PRJEB77864
172 INRP000265 Detection of ChPV from North India Detection and Molecular characterization of Chicken Parvovirus from Haryana and nearby states 2025-01-11 PRJEB84023
173 INRP000279 Developing Higher-order Knockout Population in Rice Through CRISPR-Cas9 Library Approach Developing Higher-order Knockout Population in Rice Through CRISPR-Cas9 Library Approach 2027-01-31 PRJEB85442
174 INRP000288 TSG-Neutralization profiles of globally circulating contemporary HIV-1 clade C Distinct region-specific neutralization profiles of contemporary HIV-1 clade C against best-in- class broadly neutralizing antibodies 2025-04-29 PRJEB86759
175 INRP000290 SCREENING, ISOLATION AND CHARACTERIZATION OF CELLULOLYTIC BACTERIA Bacillus sp. FROM PAPER INDUSTRY SLUDGE This study focuses on isolating efficient cellulase-producing bacteria from activated sludge of paper and pulp industry waste for potential large-scale biorefining. A novel strain, RAYS, was isolated and screened for cellulolytic activity using filter-paper strips and Congo red assays. Enzyme assays followed IUPAC methods, showing peak activity at 72 hours 37 degree Celsius , pH 7. 16S rRNA analysis revealed 94 percent similarity to Bacillus cereus and Bacillus anthracis, suggesting a new Bacillus species. 2025-03-23 PRJEB86041
176 INRP000291 To evaluate viral diversity in LTBI and reactivation within PLHIV Evaluation of HIV-1C diversity at different stages of HIV-TB coinfection 2025-04-29 PRJEB86760
177 INRP000333 Epstein-Barr Virus proteins and their association with oral cancer Epstein-Barr Virus proteins and their association with oral cancer 2025-05-19 PRJEB89702
178 INRP000200 Mammaliicoccus lentus strain K169 Staphylococcus lentus K169 Genome sequencing 2024-12-10 PRJNA737659
179 INRP000269 Microbe sample from Megasphaera elsdenii Draft genome sequence of Megasphaera elsedenii isolated from the gut of a healthy India 2025-01-14 PRJNA398182
180 INRP000232 Vibrio cholerae strain:IDH08148 Genome sequencing and assembly Vibrio cholerae strain:IDH08148 2024-12-19 PRJNA523107
181 INRP000221 Fictibacillus fluitans strain:NE201 Genome sequencing and assembly Fictibacillus fluitans strain:NE201 2024-12-17 PRJNA990360
182 INRP000041 Chloroplast genome of Oryza officinalis Chloroplast genome sequence of Oryza officinalis 2022-12-26 PRJEB58648
183 INRP000297 Genome Sequence of the Carotenoid-Producing Estuarine Oleaginous Yeast Rhodotorula pacifica INDKK Using Illumina and Nanopore Hybrid Assembly The hybrid denovo genome assembly resulted in 33.6 Mb genome size that was organized in total of 117 contigs with N50 value as 1123312 and GC content of 59.49 . 2025-03-31 PRJEB87240
184 INRP000191 Complete Genome Sequence of Lactobacillus sp Isolated from the high vaginal swab of pregnant Indian women Complete Genome Sequence of Lactobacillus sp Isolated from the high vaginal swab of pregnant Indian women 2024-12-10 PRJEB83316
185 INRP000172 RNAseq study of leaf, stem and root from Polygonum posumbu syn. Persicaria posumbu RNA sequencing and transcriptome assembly of Polygonum posumbu to identify genes involved in flavonoid biosynthesis pathway 2024-12-18 PRJEB80587
186 INRP000242 Paenibacillus sp. strain UniB2 Paenibacillus albicereus strain UniB2 Isolate Not applicable 2024-12-18 PRJNA624876
187 INRP000236 Alkalihalobacterium chitinilyticum strain:MEB203 Genome sequencing and assembly Alkalihalobacterium chitinilyticum strain:MEB203 2024-12-18 PRJNA882667
188 INRP000235 Nitrincola tapanii strain:MEB193 Genome sequencing and assembly Nitrincola tapanii strain:MEB193 2024-12-18 PRJNA525988
189 INRP000327 WGS of Mixta calida of Indian Origin Comprehensive Genomic Analysis of Mixta calida Isolated from the Faecal Sample of a Tuberculosis Patient in India 2026-05-17 PRJEB89099
190 INRP000212 Chakrabartia godavariana strain:PRB40 Genome sequencing and assembly Chakrabartia godavariana strain:PRB40 2024-12-14 PRJNA498214
191 INRP000218 Lipingzhangella rawalii strain:LS1-29 Genome sequencing and assembly Lipingzhangella rawalii strain LS1-29 2024-12-17 PRJNA1014252
192 INRP000240 Lactiplantibacillus plantarum strain:E2C2 Genome sequencing and assembly Lactiplantibacillus plantarum strain:E2C2 2024-12-18 PRJNA311909
193 INRP000206 Rothia santali strain:AR01 Genome sequencing and assembly Rothia santali strain:AR01 2024-12-14 PRJNA843603
194 INRP000329 Complete Chloroplast genome of wild Musa species of India Comparative analysis the complete chloroplast genomes in wild Musa species of India for its phylogenetic and taxonomic implications 2025-06-02 PRJEB89527
195 INRP000205 Molecular Insights into Antimicrobial Resistance Traits of Multidrug Resistant Enteric Pathogens isolated from India Study describes the whole genome information of salmonella typhi bacteria which was isolated from a acute diarrhea patient. 2024-12-15 PRJEB83584
196 INRP000223 Ureibacillus aquaedulcis strain:BA0131 Genome sequencing and assembly Ureibacillus aquaedulcis strain:BA0131 2024-12-17 PRJNA990357
197 INRP000217 Klebsiella indica strain:TOUT106 Genome sequencing and assembly Klebsiella indica strain:TOUT106 2024-12-17 PRJNA543754
198 INRP000219 Peteryoungia desertarenae strain:ADMK78 Genome sequencing Peteryoungia desertarenae strain:ADMK78 2024-12-17 PRJNA543758
199 INRP000216 Rhizobium indicum strain:JKLM12A2 Genome sequencing Rhizobium indicum strain:JKLM12A2 2024-12-17 PRJNA543966
200 INRP000202 Staphylococcus epidermidis strain:K3.2 Staphylococcus epidermidis K3.2 Genome sequencing 2024-12-10 PRJNA737462
201 INRP000215 Paenibacillus oleatilyticus strain:SM 69 Genome sequencing and assembly Paenibacillus oleatilyticus strain:SM 69 2024-12-17 PRJNA737459
202 INRP000201 Mammaliicoccus sciuri strain K117.2 Staphylococcus sciuri K117.2 Genome sequencing 2024-12-10 PRJNA737636
203 INRP000196 Genomic Insights into Natrialba swarupiae A New Bacterial Species Isolated from the Sambhar salt lake Natrialba swarupiae sp nov a halophilic archaeon isolated from a hypersaline lake in India 2024-12-01 PRJNA561681
204 INRP000134 Genome sequence of safflower-A2 Whole genome sequencing of safflower A2 using PacBio HiFi reads, Optical mapping, HiC and Illumina paired-end reads 2026-02-17 PRJEB74307
205 INRP000127 Genome Assembly of Indigenous Cattle using Linked Reads Genome sequencing of indigenous milch breeds of cattle using Linked-Read Technology to assemble a high-quality contiguous genome assembly. 2025-02-22 PRJEB72252
206 INRP000230 Vibrio cholerae strain:IDH06781 Genome sequencing and assembly Vibrio cholerae strain:IDH06781 2024-12-19 PRJNA523099
207 INRP000222 Chryseobacterium urinae strain:APV1 Genome sequencing and assembly Chryseobacterium urinae strain:APV1 2024-12-17 PRJNA989146
208 INRP000204 Complete Genome Sequence of Faecalibacterium prausnitzii Isolated from the Gut of a Healthy Indian Adult Faecalibacterium prausnitzii is the most abundant member of the phylum Firmicutes found in the colon of healthy humans. It is a strict anaerobe and plays an important role in intestinal homeostasis. Here, we report the complete genome sequence of F. prausnitzii strain Indica. 2024-12-13 PRJNA413728
209 INRP000207 Bacillus sp. strain UniB3 Niallia alba strain:UniB3 isolate:Not applicable 2024-12-13 PRJNA626649
210 INRP000195 Genomic Insights into Savagea serpentis Description and genomic insights into a multidrug resistant novel bacterium Savagea serpentis sp nov isolated from the scats of a vine snake Ahaetulla nasuta 2024-11-29 PRJNA673385
211 INRP000199 Staphylococcus aureus strain:A3.1 Staphylococcus aureus strain:A3.1 Genome sequencing and assembly 2024-12-10 PRJNA737075
212 INRP000225 Collinsella aerofaciens strain:indica Genome sequencing Collinsella aerofaciens strain:indica 2024-12-19 PRJNA415274
213 INRP000237 Alkalihalobacterium elongatum strain:MEB199 Genome sequencing and assembly Alkalihalobacterium elongatum strain:MEB199 2024-12-18 PRJNA590117
214 INRP000226 Segatella copri strain:Indica Genome sequencing and assembly Segatella copri strain:Indica 2024-12-19 PRJNA393007
215 INRP000300 Burkholderia gladioli strain:NGJ1 Burkholderia gladioli strain:NGJ1 Genome sequencing and assembly 2025-03-17 PRJNA286078
216 INRP000210 Ignatzschineria sp. RMDPL8A Genome sequencing and assembly Ignatzschineria sp. RMDPL8A 2024-12-14 PRJNA907172
217 INRP000174 Whole Transcriptome Analysis of Capsicum chinense King Chilli Molecular characterisation of Capsicum chinense King Chilli for production of pungent and non pungent pigments 2024-12-20 PRJEB80590
218 INRP000198 Alkalimonas cellulosilytica strain:MEB108 Alkalimonas cellulosilytica strain:MEB108 Genome sequencing and assembly 2024-12-08 PRJNA989384
219 INRP000038 Emerging drug resistance in community-acquired urinary tract infection and molecular insights into dynamics of resistance traits in Indian isolates- A multi-centric cross-sectional study Genome profiling of Uropathogenic E.coli from community acquired UTI in paediatric patients. 2023-07-01 PRJEB57435
220 INRP000203 Staphylococcus chromogenes strain:K29 Staphylococcus chromogenes K29 Genome sequencing 2024-12-10 PRJNA738617
221 INRP000224 Bifidobacterium longum strain Indica Genome sequencing and assembly Bifidobacterium longum strain Indica 2024-12-19 PRJNA398177
222 INRP000233 Vibrio cholerae strain:IDH046 Genome sequencing and assembly Vibrio cholerae strain:IDH046 2024-12-19 PRJNA523098
223 INRP000072 Vigna umbellata WGS of cultivar:VRB3 Raw sequence reads PacBio and Illumina WGS reads of Vigna umbellata for genome assembly 2023-06-21 PRJEB63305
224 INRP000319 A hybrid De novo Genome assembly of Saccharomyces cerevisae isolate NGY10 using Nanopore and Illumina Sequencing. A thermotolerant isolate, Saccharomyces cerevisiae NGY10, obtained from sugarcane distillery waste, exhibits high potential for lignocellulosic ethanol production. The strain is capable of efficient fermentation at 40 degree Celsius, achieving 92.81 and 86.43 percent fermentation efficiency during separate hydrolysis and fermentation and simulatenous saccharification and fermentation processes , respectively, using dilute acid-pretreated rice straw. The genome of NGY10 was sequenced using hybrid approach combining Illumina and Oxford Nanopore technologies. De novo assembly resulted in 39 contigs, with a total genome size of 12.8 Mb. 2025-04-10 PRJEB88324
225 INRP000173 RNA seq analysis for identification of genes involved in production of berberine in Zanthoxylum armatum RNA seq analysis fro identification of genes involved in berberine production from three tissue types of Zanthoxylum armatum 2024-12-19 PRJEB80589
226 INRP000060 Chloroplast genome assembly of Oryza meyeriana var indandamanica Chloroplast genome assembly of Oryza meyeriana var indandamanica was performed 2023-04-30 PRJEB61731
227 INRP000211 Hydrogenophaga sp.strain BA0156 Hydrogenophaga crocea strain BA0156 2024-12-14 PRJNA611009
228 INRP000208 Methylophaga lonarensis MPL Genome sequencing and assembly Methylophaga lonarensis MPL 2024-12-13 PRJNA186923
229 INRP000331 Exploring the role of metabolites in induction of Viable but Non-Culturable (VBNC) state in Klebsiella pneumoniae and Acinetobacter baumannii This study examines how environmental stressors such as antibiotics disinfectants food preservatives and industrial effluents induce the VBNC state in Klebsiella pneumoniae and Acinetobacter baumannii. Using a multiomic approach including metabolomics transcriptomics and genomics the research identifies key metabolic and genetic changes that help these pathogens survive in nonculturable but viable forms. Findings offer insights into bacterial persistence and potential strategies for improved detection and control. 2025-05-19 PRJEB89678
230 INRP000209 Marisediminicola senii strain:SM7 A14 Genome sequencing and assembly Marisediminicola senii strain:SM7 A14 2024-12-14 PRJNA607684
231 INRP000074 Community-acquired UTI epidemiological study from four different geographical region. Phenotypic and genotypic distribution and epidemiology of ESBL positive, MDR uropathogens in the community settings of India: A multicentric cross-sectional study 2025-06-21 PRJEB63408
232 INRP000093 Hybrid genome sequencing of the sexually dimorphic Chrysolophus amherstiae Hybrid de novo genome assembly of the sexually dimorphic Chrysolophus amherstiae 2025-09-01 PRJEB65867
233 INRP000197 Alkalimonas mucilaginosa strain:MEB004 Alkalimonas mucilaginosa strain:MEB004 Genome sequencing and assembly 2024-12-09 PRJNA988303
234 INRP000278 WGS of Panicum sumatrense Whole genome assembly of Little millet 2025-02-12 PRJEB85290
235 INRP000239 Bacillus sp. AM 13(2015) strain:AM 13 Genome sequencing and assembly Bacillus sp. AM 13 2015 strain:AM 13 2024-12-18 PRJNA295799
236 INRP000231 Vibrio cholerae strain:VCE232 Genome sequencing and assembly Vibrio cholerae strain:VCE232 2024-12-19 PRJNA523119
237 INRP000220 Natronococcus pandeyae strain:LS1_42 Genome sequencing and assembly Natronococcus pandeyae strain:LS1-42 2024-12-17 PRJNA419469
238 INRP000238 Halalkalibacter alkaliphilus strain:MEB205 Genome sequencing and assembly Halalkalibacter alkaliphilus strain:MEB205 2024-12-18 PRJNA806734
239 INRP000241 Lactiplantibacillus plantarum strain:E2C5 Genome sequencing and assembly Lactiplantibacillus plantarum strain E2C5 2024-12-18 PRJNA313343