Indian Nucleotide Data Archive

A comprehensive record of the world's nucleotide sequencing information

Submitted Study Details . Total study submitted: 87, Total Submitted Run: 4496 Back

S. No INDA Accession Study Title Study Description Centre Name Submitted Date Release Date INSDC Accession No of Run
1 INRP000009 DNA methylation Whole Genome Bisulfite sequencing of rice Department of Plant molecular biology, University of Delhi 2021-06-23 2021-06-23 PRJEB45886 1
2 INRP000010 Characterization of novel regulators for heat stress tolerance in tomato from Indian sub-continent transcriptome of tomato National Institute of plant Genome Research 2021-06-23 2021-06-30 PRJEB45906 2
3 INRP000011 Drought resonsive miRNome of rice Charaterization of drought resonsive miRNome in flag leaf of rice. University of Delhi South Campus 2021-06-11 2021-06-14 PRJEB45633 2
4 INRP000017 Investigations on regulation of miRNAs in rice reveal [Ca2+]cyt signal transduction regulated miRNAs Cytosolic calcium mediated regulation of miRNAs in rice cultivar N22. University of Delhi South Campus 2021-08-23 2021-09-28 PRJEB47136 8
5 INRP000020 Variety-specific transcript accumulation during reproductive stage drought stress in rice RNA-Seq analysis of rice varieties Nagina22 and IR64 in adult tissues of Flag leaf, inflorescence and root under control and field drought conditions. University of Delhi South Campus 2021-09-08 2021-10-15 PRJEB47431 36
6 INRP000029 Genomic Surveillance for SARS CoV 2 In India Indian SARS CoV 2 Genomics Consortium INSACOGG The proposed genomic surveillance for SARS CoV 2 In India is aimed at sustained detection of mutations in the viral genome from samples from all regions in India Center of Excellence Department of Microbiology BJ Government Medical College Pune 2022-06-11 2022-06-11 PRJEB53470 1
7 INRP000031 Genome sequencing and assembly of Brassica Carinata accession HC20 Brassica Carinata accession HC20 genome sequencing Centre for Genetic Manipulation of Crop Plants, University of Delhi South Campus (Prof. Deepak Pental and Dr. Paritosh Kumar) 2022-08-25 2023-08-24 PRJEB55587 2
8 INRP000032 Transcriptome analysis of Dermal Fibroblasts from VL and PKDL patients Transcriptome analysis of Dermal Fibroblasts from VL and PKDL patients reveal disease specific gene expression and pathological regulation Sneha Singh, Manas Ranjan Dikhit, Abhik Sen, ICMR-RMRIMS, AGAMKUAN, PATNA. 800007 2022-09-08 2024-09-02 PRJEB56308 9
9 INRP000035 Indica Rice Genome sequencing The study involves sequencing the whole genome of five indica rice varieties namely, Nagina22, IR64, Anjali, Vandana and Pusa Basmati1. Paired-end genomic libraries were prepared and sequenced using Illumina platform and assembled to find sequence variations between these varieties and the japonica Nipponbare genomic sequence. Saurabh Raghuvanshi, University of Delhi South Campus 2022-09-21 2023-10-01 PRJEB56693 9
10 INRP000036 Onion Mitochondrial Genome Sequencing of CMS and Maintainer Line Onion mitochondrial genome sequencing and comparative analysis of 97A CMS and 97B Maintainer line Deepak Singla and School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana 2022-10-27 2024-10-27 PRJEB57244 2
11 INRP000037 Genome wide association mapping for key agronomic traits in Brassica juncea Creating a fully characterized genetic resource pipeline for mustard improvement programme in India Dr. Surinder S. Banga, Punjab Agricultural University, Ludhiana, India 2022-10-27 2023-07-27 PRJEB57434 70
12 INRP000038 Emerging drug resistance in community-acquired urinary tract infection and molecular insights into dynamics of resistance traits in Indian isolates- A multi-centric cross-sectional study Genome profiling of Uropathogenic E.coli from community acquired UTI in paediatric patients. Dr. Sarita Mohapatra, Department of Microbiology, All Indian Institute of Medical Sciences 2022-11-04 2023-07-01 PRJEB57435 19
13 INRP000044 Whole genome ChIP-seq analysis for three histone modifications in indica rice N22 and IR64 Chromatin immuno precipitation of three different histone modifications namely, H3K4me3, H3K27me3 and H3K9ac were performed in Oryza sativa subspe indica cv. IR64 and N22. Santosh Kumar, Shivani Kansal and Saurabh Raghuvanshi, University of Delhi South Campus 2022-12-30 2023-01-01 PRJEB58710 24
14 INRP000047 Whole genome bisulphite sequencing of drought tolerant and sensitive rice cultivars Analysis of whole genome methylation profiles of the drought sensitive and tolerant rice cultivars. Bisulphite sequencing was conducted for three tissues, panicle, flag leaf and root under control condition and drought stress. Saloni Mathur, Ringyao Jajo, Saurabh Raghuvanshi, UDSC 2022-12-31 2023-02-01 PRJEB58713 25
15 INRP000050 Heterogeneity in antimicrobial resistance potency and functionality among multidrug- resistant Gram-negative pathogens: Phenotypic, genotypic and proteomic analysis AMR heterogeneity in Gram-negative pathogens Translational Health Science and Technology Institute, Faridabad 2023-02-01 2023-12-31 PRJNA925003 203
16 INRP000051 Molecular mapping of QTLs associated with grain elongation in Basmati rice - Oryza sativa L. Molecular Mapping of QTLs Associated with Grain Elongation in Basmati Rice was undertaken to identify QTLs associated with grain elongation in basmati rice using BSA and whole genome sequencing based on F2 population derived from self pollinated F1 plants generated from a cross between Basmati 370 and Pusa Basmati 1121. The identified QTLs associated with grain elongation can be further used in basmati rice breeding programmes for grain elongation. To identify the QTLs associated with grain elongation the following objectives were designed i. To accomplish morphological analysis for grain elongation along with the development of genotypic pools to carry out bulked segregant analysis in basmati rice ii. To identify genomic regions associated with grain elongation using BSA-sequencing and iii. To validate the identified QTLs associated with the grain elongation in basmati rice. R K Salgotra, Sher e Kashmir University of Agricultural Sciences and Technology of Jammu, Jammu and Kashmir 2023-02-15 2023-11-30 PRJEB60058 4
17 INRP000053 Genomics for conservation of indigenous cattle breeds and for enhancing milk yield-I Indigenous cattle breed sequencing National Institute of Animal Biotechnology, Hyderabad 2023-02-20 2025-02-20 PRJEB63525 179
18 INRP000055 FH India Exome sequencing in Indian patients with definite Familial Hypercholesterolemia P D Hinduja Hospital and Medical Research Centre 2023-02-25 2025-01-24 PRJEB61804 60
19 INRP000058 Photosynthetic efficiency and transcriptome analysis of Dunaliella salina under hypersaline Understanding the molecular mechanisms of environmental salinity stress tolerance and acclimation strategies by photosynthetic organisms facilitates accelerating the genetic improvement of tolerant economically important crops Pavithra Ramachandran, University of Hyderabad 2023-03-17 2023-06-16 PRJEB61068 6
20 INRP000059 Comparison of sdRAD vs ddRAD in 48 genotypes of sesame A comparison between the efficiency, effectiveness, and feasibility between the two methodologies of restriction digestion based genotyping by sequencing, single and double digest, was performed in sesame to identify the best method of choice for large scale genotyping experiments. ICAR-National Bureau of Plant Genetic Resources, Parimalan Rangan 2023-03-20 2023-04-01 PRJEB60972 96
21 INRP000062 Molecular diversity studies in sesame using ddRAD-seq approach Molecular diversity studies for 2496 sesame accessions using ddRAD-seq approach and a development of coreset using molecular data ICAR National Bureau of Plant Genetic Resources, Parimalan Rangan 2023-04-28 2024-04-16 PRJEB61739 2496
22 INRP000063 16S Metagenomic Analysis Organic Waste Bio-composts 16S rRNA metagenomic profiling of organic waste bio-composts Daulat Ram College, University of Delhi 2023-05-08 2023-07-12 PRJEB62440 10
23 INRP000065 16S Metagenomic Analysis Soils amended with bio-composts 16S rRNA metagenomic profiling of soils amended with different types of bio-compost Sophayo Mahongnao, Daulat Ram College, University of Delhi 2023-05-19 2024-01-01 PRJEB62447 16
24 INRP000066 16S metagenomic analysis of underground water of Delhi 16S rRNA Metagenomic profiling of underground water of Delhi to identify the beneficial and pathogenic bacteria. Sophayo Mahongnao, Daulat Ram College, University of Delhi 2023-05-25 2024-01-01 PRJEB62623 4
25 INRP000068 16S metagenomic analysis of red amaranth 16S metagenomic analysis of organically grown Red Amaranth grown with different soils Pooja Sharma, Daulat Ram College, University of Delhi 2023-05-30 2023-12-31 PRJEB62721 10
26 INRP000071 Resequencing of Indian wheat landraces Whole genome resequencing of Indian wheat landraces National Institute of Plant Genome Research 2023-06-16 2025-06-19 PRJEB63273 83
27 INRP000072 Vigna umbellata WGS of cultivar:VRB3 Raw sequence reads PacBio and Illumina WGS reads of Vigna umbellata for genome assembly Aleena Francis, Swarup Kumar Parida, Debasis Chattopadhyay, NIPGR,NBPGR,NIN,IARI,ICAR 2023-06-19 2023-06-21 PRJEB63305 2
28 INRP000073 Somatic Variations in na´ve Prostate cancer and Castration resistant Prostate Cancer Clinico genetic prognostic signature for development of metastatic Castration Resistant Prostate Cancer Kumar Sandeep, Durgavati Yadav, Monu Deshwal, Dibyabhaba Pradhan and Prabhjot Singh, All India Institute of Medical Sciences, New Delhi 2023-06-21 2025-06-20 PRJEB63609 33
29 INRP000074 Community-acquired UTI epidemiological study from four different geographical region. Phenotypic and genotypic distribution and epidemiology of ESBL positive, MDR uropathogens in the community settings of India: A multicentric cross-sectional study Dr. Sarita Mohapatra, All Indian Institute of Medical Sciences 2023-06-21 2025-06-21 PRJEB63408 76
30 INRP000075 Sulfur metabolism in Mycobacterium tuberculosis Deciphering the role of sulfur metabolism in mycobacterial physiology and pathogenesis Vaibhav Kumar Nain and Amit Kumar Pandey Centre for TB Research THSTI 2023-06-27 2025-06-27 PRJEB64040 6
31 INRP000076 VapC12 Host RNA Seq Transcriptomic analysis of VapC12 induced immuno modulation in host Shaifali Tyagi and Amit Kumar Pandey THSTI 2023-06-30 2024-06-30 PRJEB63988 9
32 INRP000077 Rv1906c mediated host immunomodulation Rv1906c mediated host immunomodulation in mice model of TB infection Vishawjeet Barik and Amit Kumar Pandey THSTI 2023-07-01 2025-07-01 PRJEB64201 6
33 INRP000078 Genomic analyses of three waterborne Escherichia coli strains of phylogroup D Genomic analyses of three waterborne Escherichia coli strains of phylogroup D University of Delhi South Campus, Manish Kumar 2023-07-03 2022-10-13 PRJNA890036 3
34 INRP000079 Enterococcus faecium strain:LR13 Comparative de novo genomic analysis of indigenous probiotic Enterococcus faecium LR13 reveals cholesterol-assimilation as an intrinsic strain specific trait University of Delhi South Campus, Manish Kumar 2023-07-03 2023-03-21 PRJNA866315 1
35 INRP000080 Rv0495c mediated host response Transcriptomic profiling of mouse lungs infected with WT and Rv0495c mutant of M. tuberculosis Rahul Pal and Amit Kumar Pandey THSTI 2023-07-03 2024-06-01 PRJEB64000 6
36 INRP000081 In vitro transcriptomic profiling of Rv0452 mutant of M. tuberculosis In vitro transcriptomic profiling of Rv0452 mutant of M. tuberculosis Rahul Pal and Amit Kumar Pandey THSTI 2023-07-03 2025-07-03 PRJEB64677 6
37 INRP000082 In vitro pH dependent transcriptomic profiling of Rv1906c mutant of Mycobacterium tuberculosis In vitro pH dependant transcriptomic profiling of Rv1906c mutant of Mycobacterium tuberculosis Vishawjeet Barik and Amit Kumar Pandey Centre for Tuberculosis Research THSTI 2023-07-05 2025-07-05 PRJEB64152 12
38 INRP000083 Above and below ground biodiversity in different forage production systems (CRSCIGFRISIL20190203xxxxx) Study microbiome diversity in three different forage production systems Annual system perennial system and grassland ICAR Indian Grassland and Fodder Research Institute 2023-07-06 2023-07-07 PRJEB64147 9
39 INRP000084 Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice Pallavi Sinha, International Rice Research Institute 2023-07-11 2024-01-24 PRJEB70241 10
40 INRP000085 ITS metagenomic analysis of bio-composts ITS metagenomic analysis of the leaf waste bio-composts and other organic waste bio-composts Sophayo Mahongnao, Daulat Ram College, University of Delhi 2023-07-19 2024-01-01 PRJEB64472 10
41 INRP000086 Differential Transcriptional landscape of Vero cells during DENV2 infection in the presence of Sinococuline Transcriptional alteration associated withSinococuline treatment in DENV2 infected Vero cells Amit Garg, ICGEB New Delhi 2023-07-19 2025-08-18 PRJEB65277 7
42 INRP000089 ITS metagenomic profiling of the soils amended with composts The ITS metagenomic profiling of different types of soils amended with different organic waste composts. Sophayo Mahongnao, Daulat Ram College, University of Delhi 2023-07-25 2024-01-01 PRJEB67873 16
43 INRP000090 Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought (Asian cultivated rice) Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought Akashata Dawane, Sanjay H Deshpande, Preethi Vijayaraghavareddy, Ramu S V, Regional Centre For Biotechnology,Faridabad 2023-07-26 2024-03-20 PRJNA972661 12
44 INRP000094 ITS metagenomic analysis of red amaranth ITS metagenomic analysis of red amaranth grown with two different soil types. Pooja Sharma, Daulat Ram College, University of Delhi 2023-09-04 2024-01-01 PRJEB65854 9
45 INRP000097 Role of pgmA in mycobacterial pathogenesis In this project we present a comprehensive characterization and functional analysis of mycobacterial pgmA focusing on its role in central metabolic flux under different environmental conditions We further analysed its implication in disease biology and pathogenesis We have employed a combination of biochemical and genetic approaches to elucidate the functional properties of this key enzyme in mycobacteria Taruna Sharma Dr Amit Kumar Pandey center for tuberculosis research 2023-09-11 2024-09-11 PRJEB66126 12
46 INRP000098 Exploring genome diversity of Termite and termitarium from Western ghats for novel anti-microbials Exploring genome diversity of Termite and termitarium from Western ghats for novel anti-microbials Dhanalakshmi Venkatesan, Subalakshmi Kaarmegam Pandiarajan, Rajendhran Jeyaprakash and Madurai Kamaraj University 2023-09-11 2023-09-30 PRJEB66132 1
47 INRP000099 Genome-wide analysis of DNase hypersensitive sites in rice cultivars Genome-wide mapping of DNase I hypersensitive sites revealed differential chromatin accessibility in rice cultivars Mukesh Jain, School of Computational and Integrative Sciences, Jawaharlal Nehru University 2023-09-13 2025-09-13 PRJEB66718 9
48 INRP000100 Microbiome analysis of saliva from Oral Squamous Cell Carcinoma patients and tobacco abusers with potential biomarkers for Oral cancer screening Microbiome analysis of saliva from Oral Squamous Cell Carcinoma patients and tobacco abusers with potential biomarkers for Oral cancer screening Bolaji F. Oyeyemi and Neel Sarovar Bhavesh 2023-10-14 2023-10-13 PRJEB67576 30
49 INRP000103 Bacillus anthracis strain: AP-RP1CH1 DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, L. Lahari, S. Vijalakshmi, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash; Madurai Kamaraj University 2023-10-30 2024-09-01 PRJEB70776 1
50 INRP000105 NeoOBS Neonatal sepsis - NeoOBS All India Institute of Medical Sciences, New Delhi 2023-11-03 2025-11-17 PRJEB70236 240
51 INRP000107 DH study Neonatal sepsis in district hospitals All India Institute of Medical Sciences, New Delhi 2023-11-20 2025-11-20 PRJEB70311 181
52 INRP000110 Bacillus anthracis strain: APRP2CH DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, L. Lahari, S. Vijalakshmi, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash; Madurai Kamaraj University 2023-12-06 2024-09-01 PRJEB71758 1
53 INRP000111 Bacillus anthracis strain: APRP3CH DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, L. Lahari, S. Vijalakshmi, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2023-12-09 2024-09-01 PRJEB71010 1
54 INRP000112 Bacillus anthracis strain: APZCH DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, L. Lahari, S. Vijalakshmi, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2023-12-11 2024-09-01 PRJEB71062 1
55 INRP000114 Bacillus anthracis strain: KAC1971 DBT Network Programme on Anthrax Diagnosis and Control in India Shivaraj Murag, Manohar Raju. V, Kavya.M, Keerthana. R, Sripad. K, Raveendra Hedge, Kaarmegam Pandiarajan Subalakshmi, Raison Joseph and Jeyaprakash Rajendhran, Madurai Kamaraj University 2023-12-22 2024-09-01 PRJEB71760 1
56 INRP000115 Bacillus anthracis strain: APN3 DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, B. Gireesha, S. Vijalakshmi, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2023-12-23 2024-09-01 PRJEB71574 1
57 INRP000116 Bacillus anthracis strain: APK1 DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, L. Lahari, S. Vijalakshmi, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2023-12-23 2024-09-01 PRJEB71575 1
58 INRP000117 Bacillus anthracis strain: APCH8 DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, B. Gireesha, S. Vijalakshmi, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2023-12-23 2024-09-01 PRJEB71576 1
59 INRP000118 Bacillus anthracis strain: APA5 DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, B. Gireesha, S. Vijalakshmi, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2023-12-23 2024-09-01 PRJEB71577 1
60 INRP000119 Bacillus anthracis strain: KAB420 DBT Network Programme on Anthrax Diagnosis and Control in India Shivaraj Murag, Manohar Raju. V, Kavya. M, Keerthana. R, Sripad.K, Raveendra Hegde, Kaarmegam Pandiarajan Subalakshmi, Raison Joseph, and Rajendhran Jeyaprakash, Madurai Kamaraj University 2024-01-05 2024-09-01 PRJEB71690 1
61 INRP000120 Bacillus anthracis strain: KAC826 DBT Network Programme on Anthrax Diagnosis and Control in India Shivaraj Murag, Manohar Raju. V, Kavya. M, Keerthana. R, Sripad.K, Raveendra Hegde, Kaarmegam Pandiarajan Subalakshmi, Raison Joseph, and Rajendhran Jeyaprakash, Madurai Kamaraj University 2024-01-05 2024-09-01 PRJEB71744 2
62 INRP000121 Bacillus anthracis strain: KAT2211 DBT Network Programme on Anthrax Diagnosis and Control in India Shivaraj Murag, Manohar Raju. V, Kavya.M, Keerthana. R, Sripad. K, Raveendra Hedge, Kaarmegam Pandiarajan Subalakshmi, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2024-01-05 2024-09-01 PRJEB71717 1
63 INRP000122 Bacillus anthracis strain: KAC2352 DBT Network Programme on Anthrax Diagnosis and Control in India Shivaraj Murag, Manohar Raju. V, Kavya. M, Keerthana. R, Sripad.K, Raveendra Hegde, Kaarmegam Pandiarajan Subalakshmi, Raison Joseph, and Rajendhran Jeyaprakash, Madurai Kamaraj University 2024-01-06 2024-09-01 PRJEB71719 1
64 INRP000123 Bacillus anthracis strain: KAV2486 DBT Network Programme on Anthrax Diagnosis and Control in India Shivaraj Murag, Manohar Raju. V, Kavya.M, Keerthana. R, Sripad. K, Raveendra Hedge, Kaarmegam Pandiarajan Subalakshmi, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2024-01-06 2024-09-01 PRJEB71720 1
65 INRP000124 Bacillus anthracis strain: KAB726 DBT Network Programme on Anthrax Diagnosis and Control in India Shivaraj Murag, Manohar Raju. V, Kavya. M, Keerthana. R, Sripad.K, Raveendra Hegde, Kaarmegam Pandiarajan Subalakshmi, Raison Joseph, and Rajendhran Jeyaprakash, Madurai Kamaraj University 2024-01-06 2024-09-01 PRJEB71721 1
66 INRP000125 Bacillus anthracis strain: APRSCH DBT Network Programme on Anthrax Diagnosis and Control in India D. Rani Prameela, S. Vijalakshmi, L. Lahari, Subalakshmi Kaarmegam Pandiarajan, Raison Joseph and Rajendhran Jeyaprakash, Madurai Kamaraj University 2024-01-08 2024-09-01 PRJEB71759 1
67 INRP000127 Genome Assembly of Indigenous Cattle using Linked Reads Genome sequencing of indigenous milch breeds of cattle using Linked-Read Technology to assemble a high-quality contiguous genome assembly. Sarwar azam National Institute of Animal Biotechnology 2024-01-22 2025-02-22 PRJEB72252 5
68 INRP000128 Identification of key molecular factors involved in resistance or susceptibility to para-tuberculosis infection in indigenous breeds of cows. This study provides crucial insights into the transcriptomic and genomic landscape of both infected and uninfected cattle revealing key genes, lncRNAs and SNPs associated with the disease condition. By identifying DEGs and potential biomarkers linked to MAP infection, the study offers valuable contributions to disease management and molecular understanding. These markers hold promise for integration into breeding programs facilitating the selection of cattle with increased resistance to MAP infection. Sarwar Azam, National Institute of Animal Biotechnology 2024-01-27 2024-04-20 PRJEB72268 47
69 INRP000130 Bacillus anthracis strain: ODK9 DBT Network Programme on Anthrax Diagnosis and Control in India Niranjana Sahoo, Sangram Biswal, Alok Das Dr. Priyadarshini Sahoo, D. Rani Prameela, Kaarmegam Pandiarajan Subalakshmi, Raison Joseph, and Jeyaprakash Rajendhran, Madurai Kamaraj University 2024-01-29 2024-09-01 PRJEB72244 1
70 INRP000131 RSD mediated rpression of NIN and NLP2 activity is crucial for nodule devlopment Transcriptome data for Medicago truncatula R108 15 dpi nodules for analyzing stoichiometry of RSD and NIN. Samples are transgenic nodules from pRSD vector control and pRSD-NIN 1-602 overexpression lines. Akanksha Bhardwaj et. al.,NIPGR, Delhi, India 2024-02-01 2024-12-31 PRJEB72298 6
71 INRP000132 transcriptome of medicago nodule 6 dpi adn 15 dpi Peripheral vascular strand development in nodules is controlled by a bHLH/HLH heterodimer Deevita Srivastava, Asim K Ghosh, Michael Udvardi, Aashish Ranjan, Senjuti Sinharoy, NIPGR 2024-02-01 2024-12-31 PRJEB72299 12
72 INRP000133 Translatome profiling of nodule invasion zone Translatome profiling followed by RNA sequencing Akanksha Bhardwaj et.al., NIPGR, Delhi, India 2024-02-02 2025-12-31 PRJEB72304 5
73 INRP000134 Genome sequence of safflower-A2 Whole genome sequencing of safflower A2 using PacBio HiFi reads, Optical mapping, HiC and Illumina paired-end reads Department of Botany, University of Delhi 2024-02-17 2026-02-17 PRJEB74307 3
74 INRP000137 To explore the host genetic factors influencing the visceral leishmaniasis relapse in India by NGS exome analysis To explore the host genetic factors influencing the visceral leishmaniasis relapse in India by NGS exome analysis Dr. Abhik Sen ICMR Rajendra Memorial Research Institute of Medical Sciences Agamkuan Patna 800007 2024-03-07 2026-03-08 PRJEB73749 35
75 INRP000138 Genomics assisted pathobiology to identify novel targets for diagnosis and therapeutic intervention(s) of Japanese encephalitis and Leptospirosis. Genomic insights into Leptospira isolate from India Syed M Faisal , National Institute of Animal Biotechnology, Hyderabad 2024-03-19 2025-03-30 PRJEB74137 1
76 INRP000140 Carthamus tinctorius Genome Assembly A2 New and improved genome assembly for Safflower using PacBio HiFi reads, Optical Mapping and Hi-C Department of Botany, University of Delhi 2024-04-03 2026-04-02 PRJEB74492 121
77 INRP000142 Integrative genomic and proteomic insights into the functional potency of Lactobacillus species associated with term and preterm birth Integrative genomic and proteomic insights into the functional potency of Lactobacillus species associated with term and preterm birth Daizee Talukdar,J R Yodhaanjali,Komal Sharma,Pradipta Jana,Prabhakar Babele,Akansha Kothidar,Taruna Ahrodia,K Ramani Shyam,Upma Singh,Sreevatsan Raghavan,Nitya Wadhwa GARBHIni study group;Souvik Mukherjee,Shinjini Bhatnagar,Bhabatosh Das Functional Genomics Laboratory,Centre for Microbial Research, THSTI,Faridabad;India Maternal and Child Health,THSTI,Faridabad;India Human Microbiome Research Laboratory,NIBMG,Kalyani,West Bengal,India 2024-04-12 2026-04-10 PRJEB74767 133
78 INRP000143 Single cell RNA sequencing of oral squamous cell carcinoma (OSCC) Intra-tumor cellular diversity plays an important role in cancer progression, recurrence, and overall survival of cancer patients. We used scRNA-seq to characterize the cell type and cell state diversity in the tumor ecosystem of OSCC. Prof. Arindam Maitra, Biotechnology Research and Innovation Council-National Institute of Biomedical Genomics 2024-04-15 2024-04-19 PRJEB75028 12
79 INRP000144 Annotation of desi cattle reference genome Iso seq data for the annotation of reference genome assembly of desi cattle. Sarwar Azam, National Institute of Animal Biotechnology 2024-04-19 2024-04-20 PRJEB75154 3
80 INRP000146 Differential gene expression analysis of Leishmania donovani infected macophages In a time dependent manner. RNAseq analysis of Leishmania donovani infected macrophages at 6hours,24hours,48hours post infection with respect to uninfected control. Supratim Pradhan, Dhruba Dhar, Debolina Manna, Arkapriya Bhattacharyya, Soumen Das and Budhaditya Mukherjee, SMST,IIT KHARAGPUR 2024-05-14 2025-01-01 PRJEB75777 5
81 INRP000148 RNA Methylation A Tale of Two Parasites: A Glimpse into the RNA Methylome of Patient-derived P. falciparum and P. vivax isolates Priyanka Roy, Sukriti Gujarati, Ashis Das , Birla Institute of Technology and Science (BITS), Pilani campus 2024-05-16 2026-05-16 PRJEB75779 2
82 INRP000019 CLAVATA signaling pathway genes modulates agronomic traits in chickpea The CLAVATA3 gene homolog in chickpea regulates the flowering time and flower number in chickpea. A haplotype of this gene enhances yield without compromising any other agronomic traits. National Institute of Plant Genome Research 2021-08-26 2021-08-27 PRJEB47198 1
83 INRP000048 miR158 locus and associated small RNAs Indian Himalayan natural Arabidopsis thaliana accessions with abolished miR158 levels exhibit robust miR173-initiated trans-acting cascade silencing CSIR - National Botanical Research Institute (NBRI) 2023-01-06 2023-01-10 PRJEB58789 3
84 INRP000141 Identification and isolation of microorganisms from the Arabian Sea on the west coast of Karnataka, India Identification and isolation of microorganisms from the Arabian Sea on the west coast of Karnataka, India Deepak A Yaraguppi, KLE Technological University, Hubballi 2024-04-08 2024-07-08 PRJEB74629 1